Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GSF entry

There are 10 chains in PDB entry 8GSF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	TYR 56	HIS 292
2	ARG 81	ALA 327
3	MET 5	GLN 238
A	TYR 56	HIS 292
B	ARG 81	GLN 330
C	MET 5	GLN 238
H	GLU 2	SER 118
L	TYR 1	ARG 114
E	GLU 2	SER 118
F	TYR 1	ARG 114

There are 29 helices in PDB entry 8GSF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	63	68	Right-handed alpha
Helix 2	AA2	1	85	88	Right-handed 310
Helix 3	AA3	1	100	108	Right-handed alpha
Helix 4	AA4	1	159	164	Right-handed 310
Helix 5	AA5	2	112	116	Right-handed 310
Helix 6	AA6	2	152	156	Right-handed 310
Helix 7	AA7	2	158	168	Right-handed alpha
Helix 8	AA8	2	211	216	Right-handed alpha
Helix 9	AA9	2	238	242	Right-handed 310
Helix 10	AB1	2	247	254	Right-handed 310
Helix 11	AB2	3	7	11	Right-handed 310
Helix 12	AB3	3	43	48	Right-handed alpha
Helix 13	AB4	3	64	68	Right-handed 310
Helix 14	AB5	3	98	107	Right-handed alpha
Helix 15	AB6	3	144	151	Right-handed alpha
Helix 16	AB7	A	63	69	Right-handed alpha
Helix 17	AB8	A	85	89	Right-handed 310
Helix 18	AB9	A	100	108	Right-handed alpha
Helix 19	AC1	A	159	164	Right-handed 310
Helix 20	AC2	B	158	168	Right-handed alpha
Helix 21	AC3	B	211	216	Right-handed alpha
Helix 22	AC4	B	238	242	Right-handed 310
Helix 23	AC5	B	247	254	Right-handed 310
Helix 24	AC6	C	7	11	Right-handed 310
Helix 25	AC7	C	42	46	Right-handed 310
Helix 26	AC8	C	64	69	Right-handed 310
Helix 27	AC9	C	98	106	Right-handed alpha
Helix 28	AD1	C	144	151	Right-handed alpha
Helix 29	AD2	E	61	65	Right-handed 310

There are 33 sheets in PDB entry 8GSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	72	79	first strand
Strand 2	1	234	241	anti-parallel
Strand 3	1	117	125	anti-parallel
Strand 4	1	179	183	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	90	94	first strand
Strand 2	1	218	223	anti-parallel
Strand 3	1	141	147	anti-parallel
Strand 4	1	169	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	192	193	first strand
Strand 2	1	110	114	anti-parallel
Strand 3	1	246	250	anti-parallel
Strand 4	3	39	40	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	83	85	first strand
Strand 2	2	93	95	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	100	102	first strand
Strand 2	2	266	271	parallel
Strand 3	2	172	181	anti-parallel
Strand 4	2	308	314	anti-parallel
Strand 5	2	133	134	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	122	123	first strand
Strand 2	2	317	322	anti-parallel
Strand 3	2	172	181	anti-parallel
Strand 4	2	308	314	anti-parallel
Strand 5	2	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	222	223	first strand
Strand 2	2	147	151	anti-parallel
Strand 3	2	288	299	anti-parallel
Strand 4	2	188	197	anti-parallel
Strand 5	2	256	260	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	51	52	first strand
Strand 2	3	208	223	anti-parallel
Strand 3	3	109	121	anti-parallel
Strand 4	3	163	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	70	72	first strand
Strand 2	3	208	223	anti-parallel
Strand 3	3	109	121	anti-parallel
Strand 4	3	177	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	81	86	first strand
Strand 2	3	189	194	anti-parallel
Strand 3	3	129	135	anti-parallel
Strand 4	3	152	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	A	232	250	anti-parallel
Strand 3	A	110	127	anti-parallel
Strand 4	A	179	183	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	A	232	250	anti-parallel
Strand 3	A	110	127	anti-parallel
Strand 4	A	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	141	147	anti-parallel
Strand 4	A	169	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	205	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	93	96	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	266	271	parallel
Strand 3	B	171	181	anti-parallel
Strand 4	B	308	321	anti-parallel
Strand 5	B	133	134	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	266	271	parallel
Strand 3	B	171	181	anti-parallel
Strand 4	B	308	321	anti-parallel
Strand 5	B	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	151	first strand
Strand 2	B	288	299	anti-parallel
Strand 3	B	188	197	anti-parallel
Strand 4	B	256	260	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	208	216	anti-parallel
Strand 3	C	70	72	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	208	216	anti-parallel
Strand 3	C	114	121	anti-parallel
Strand 4	C	163	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	85	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	129	135	anti-parallel
Strand 4	C	152	157	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	221	225	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	33	40	anti-parallel
Strand 3	H	96	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	69	73	first strand
Strand 2	H	78	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	24	25	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	22	first strand
Strand 2	L	78	81	anti-parallel
Strand 3	L	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	60	first strand
Strand 2	L	54	55	anti-parallel
Strand 3	L	39	41	anti-parallel
Strand 4	L	94	96	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	47	first strand
Strand 2	E	33	40	anti-parallel
Strand 3	E	93	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	E	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	77	81	anti-parallel
Strand 4	F	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	54	55	anti-parallel
Strand 3	F	40	41	anti-parallel
Strand 4	F	94	95	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GSF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSF