Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GSP entry

There are 6 chains in PDB entry 8GSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 THR 1LYS 209
2
 ARG 13LYS 217
3
 GLY 1ALA 220
4
 SER 15LEU 84
H
 GLN 1LEU 125
L
 LEU 6LEU 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8GSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
14 19Right-handed 310
Helix 2
AA2
1
31 37Right-handed alpha
Helix 3
AA3
1
60 68Right-handed alpha
Helix 4
AA4
1
94 101Right-handed 310
Helix 5
AA5
1
158 162Right-handed 310
Helix 6
AA6
2
89 98Right-handed alpha
Helix 7
AA7
2
139 143Right-handed 310
Helix 8
AA8
3
43 51Right-handed alpha
Helix 9
AA9
3
57 61Right-handed 310
Helix 10
AB1
3
83 88Right-handed alpha
Helix 11
AB2
3
89 97Right-handed alpha
Helix 12
AB3
3
138 142Right-handed 310
Helix 13
AB4
4
27 32Right-handed alpha
Helix 14
AB5
4
66 74Right-handed alpha
Helix 15
AB6
L
83 87Right-handed 310
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There are 16 sheets in PDB entry 8GSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
40 42first strand
Strand 2
1
171 176anti-parallel
Strand 3
1
79 82anti-parallel
Strand 4
1
113 114anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
50 51first strand
Strand 2
1
164 167anti-parallel
Strand 3
1
86 90anti-parallel
Strand 4
1
105 106anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
126 127first strand
Strand 2
1
69 76anti-parallel
Strand 3
1
178 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
15 19first strand
Strand 2
2
22 26anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 34first strand
Strand 2
2
155 159parallel
Strand 3
2
107 111anti-parallel
Strand 4
2
199 203anti-parallel
Strand 5
2
62 65anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
53 54first strand
Strand 2
2
206 211anti-parallel
Strand 3
2
100 104anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
79 83first strand
Strand 2
2
177 183anti-parallel
Strand 3
2
121 127anti-parallel
Strand 4
2
145 148anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
53 54first strand
Strand 2
3
199 206anti-parallel
Strand 3
3
63 65anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
53 54first strand
Strand 2
3
199 206anti-parallel
Strand 3
3
105 112anti-parallel
Strand 4
3
155 160anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
73 78first strand
Strand 2
3
184 193anti-parallel
Strand 3
3
118 125anti-parallel
Strand 4
3
145 149anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
169 170first strand
Strand 2
3
98 102anti-parallel
Strand 3
3
211 215anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
16 25anti-parallel
Strand 3
H
77 85anti-parallel
Strand 4
H
67 72anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 51first strand
Strand 2
H
33 39anti-parallel
Strand 3
H
93 98anti-parallel
Strand 4
H
117 119anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
108 111parallel
Strand 3
L
88 96anti-parallel
Strand 4
L
38 42anti-parallel
Strand 5
L
49 52anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
108 111parallel
Strand 3
L
88 96anti-parallel
Strand 4
L
101 104anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
20 25first strand
Strand 2
L
74 79anti-parallel
Strand 3
L
66 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il