Analysis of interatomic Contacts of Structural Units in PDB entry:
8GST

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GST entry

There are 4 chains in PDB entry 8GST (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -4	GLY 285
B	GLY 0	GLY 285
C	HIS -4	GLY 285
D	SER 1	GLY 285

There are 44 helices in PDB entry 8GST. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	43	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	75	83	Right-handed alpha
Helix 4	AA4	A	96	98	Right-handed 310
Helix 5	AA5	A	134	139	Right-handed alpha
Helix 6	AA6	A	154	159	Right-handed alpha
Helix 7	AA7	A	163	168	Right-handed 310
Helix 8	AA8	A	182	187	Right-handed alpha
Helix 9	AA9	A	209	211	Right-handed 310
Helix 10	AB1	A	214	223	Right-handed alpha
Helix 11	AB2	A	242	246	Right-handed 310
Helix 12	AB3	B	37	44	Right-handed alpha
Helix 13	AB4	B	45	49	Right-handed 310
Helix 14	AB5	B	75	82	Right-handed alpha
Helix 15	AB6	B	96	98	Right-handed 310
Helix 16	AB7	B	134	139	Right-handed alpha
Helix 17	AB8	B	154	159	Right-handed alpha
Helix 18	AB9	B	163	168	Right-handed 310
Helix 19	AC1	B	182	187	Right-handed alpha
Helix 20	AC2	B	209	211	Right-handed 310
Helix 21	AC3	B	214	223	Right-handed alpha
Helix 22	AC4	B	242	246	Right-handed 310
Helix 23	AC5	C	37	44	Right-handed alpha
Helix 24	AC6	C	45	49	Right-handed 310
Helix 25	AC7	C	75	82	Right-handed alpha
Helix 26	AC8	C	96	98	Right-handed 310
Helix 27	AC9	C	134	139	Right-handed alpha
Helix 28	AD1	C	154	159	Right-handed alpha
Helix 29	AD2	C	163	168	Right-handed 310
Helix 30	AD3	C	182	187	Right-handed alpha
Helix 31	AD4	C	209	211	Right-handed 310
Helix 32	AD5	C	214	223	Right-handed alpha
Helix 33	AD6	C	242	246	Right-handed 310
Helix 34	AD7	D	37	44	Right-handed alpha
Helix 35	AD8	D	45	49	Right-handed 310
Helix 36	AD9	D	75	83	Right-handed alpha
Helix 37	AE1	D	96	98	Right-handed 310
Helix 38	AE2	D	134	139	Right-handed alpha
Helix 39	AE3	D	154	159	Right-handed alpha
Helix 40	AE4	D	163	168	Right-handed 310
Helix 41	AE5	D	182	187	Right-handed alpha
Helix 42	AE6	D	209	211	Right-handed 310
Helix 43	AE7	D	214	223	Right-handed alpha
Helix 44	AE8	D	242	246	Right-handed 310

There are 20 sheets in PDB entry 8GST. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	2	6	anti-parallel
Strand 4	A	180	181	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	68	71	anti-parallel
Strand 3	A	233	235	parallel
Strand 4	A	120	126	anti-parallel
Strand 5	A	142	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	174	175	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	268	274	parallel
Strand 3	A	258	263	anti-parallel
Strand 4	A	193	198	anti-parallel
Strand 5	A	201	207	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	152	153	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	13	17	anti-parallel
Strand 3	B	2	6	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	68	71	anti-parallel
Strand 3	B	233	235	parallel
Strand 4	B	120	126	anti-parallel
Strand 5	B	142	149	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	174	175	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	268	274	parallel
Strand 3	B	258	263	anti-parallel
Strand 4	B	193	198	anti-parallel
Strand 5	B	201	207	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	152	153	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	13	17	anti-parallel
Strand 3	C	2	6	anti-parallel
Strand 4	C	180	181	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	95	first strand
Strand 2	C	68	72	anti-parallel
Strand 3	C	233	235	parallel
Strand 4	C	120	126	anti-parallel
Strand 5	C	142	149	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	174	175	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	268	274	parallel
Strand 3	C	258	263	anti-parallel
Strand 4	C	193	198	anti-parallel
Strand 5	C	201	207	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	152	153	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	2	6	anti-parallel
Strand 4	D	180	181	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	68	71	anti-parallel
Strand 3	D	233	235	parallel
Strand 4	D	120	126	anti-parallel
Strand 5	D	142	149	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	174	175	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	267	274	parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	193	198	anti-parallel
Strand 5	D	201	207	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	152	153	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GST

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GST