Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GSV entry

There are 24 chains in PDB entry 8GSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 22	ASN 182
B	GLU 76	VAL 98
C	MET 22	ASN 182
D	GLU 76	VAL 98
E	MET 22	ASN 182
F	GLU 76	VAL 98
G	MET 22	ASN 182
H	GLU 76	VAL 98
I	MET 22	ASN 182
J	GLU 76	VAL 98
K	MET 22	ASN 182
L	GLU 76	MET 97
M	MET 22	LEU 183
N	GLU 76	ILE 93
O	MET 22	ASN 182
P	GLU 77	ASP 94
Q	MET 22	ALA 180
R	GLU 76	VAL 98
S	MET 22	ASN 182
T	GLU 76	VAL 98
U	MET 22	LEU 181
V	GLU 77	VAL 98
W	MET 22	ASN 182
X	GLU 76	VAL 98

There are137 helices in PDB entry 8GSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	48	Right-handed alpha
Helix 2	AA2	A	57	62	Right-handed alpha
Helix 3	AA3	A	70	82	Right-handed alpha
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	89	101	Right-handed alpha
Helix 6	AA6	A	106	120	Right-handed alpha
Helix 7	AA7	A	125	145	Right-handed alpha
Helix 8	AA8	A	150	165	Right-handed alpha
Helix 9	AA9	A	166	173	Right-handed alpha
Helix 10	AB1	A	174	175	Right-handed 310
Helix 11	AB2	A	176	181	Right-handed 310
Helix 12	AB3	B	77	98	Right-handed alpha
Helix 13	AB4	C	23	30	Right-handed alpha
Helix 14	AB5	C	30	48	Right-handed alpha
Helix 15	AB6	C	57	62	Right-handed alpha
Helix 16	AB7	C	69	82	Right-handed alpha
Helix 17	AB8	C	82	101	Right-handed alpha
Helix 18	AB9	C	106	119	Right-handed alpha
Helix 19	AC1	C	125	145	Right-handed alpha
Helix 20	AC2	C	150	165	Right-handed alpha
Helix 21	AC3	C	166	174	Right-handed alpha
Helix 22	AC4	C	177	181	Right-handed 310
Helix 23	AC5	D	77	96	Right-handed alpha
Helix 24	AC6	E	23	48	Right-handed alpha
Helix 25	AC7	E	57	62	Right-handed alpha
Helix 26	AC8	E	70	81	Right-handed alpha
Helix 27	AC9	E	82	89	Right-handed alpha
Helix 28	AD1	E	89	101	Right-handed alpha
Helix 29	AD2	E	106	119	Right-handed alpha
Helix 30	AD3	E	125	145	Right-handed alpha
Helix 31	AD4	E	150	165	Right-handed alpha
Helix 32	AD5	E	166	173	Right-handed alpha
Helix 33	AD6	E	174	175	Right-handed 310
Helix 34	AD7	E	176	181	Right-handed 310
Helix 35	AD8	F	77	98	Right-handed alpha
Helix 36	AD9	G	23	47	Right-handed alpha
Helix 37	AE1	G	57	62	Right-handed alpha
Helix 38	AE2	G	70	82	Right-handed alpha
Helix 39	AE3	G	83	89	Right-handed alpha
Helix 40	AE4	G	90	101	Right-handed alpha
Helix 41	AE5	G	106	119	Right-handed alpha
Helix 42	AE6	G	125	145	Right-handed alpha
Helix 43	AE7	G	150	165	Right-handed alpha
Helix 44	AE8	G	166	173	Right-handed alpha
Helix 45	AE9	G	174	175	Right-handed 310
Helix 46	AF1	G	176	181	Right-handed 310
Helix 47	AF2	H	77	98	Right-handed alpha
Helix 48	AF3	I	23	47	Right-handed alpha
Helix 49	AF4	I	57	62	Right-handed alpha
Helix 50	AF5	I	69	82	Right-handed alpha
Helix 51	AF6	I	83	89	Right-handed alpha
Helix 52	AF7	I	91	101	Right-handed alpha
Helix 53	AF8	I	106	119	Right-handed alpha
Helix 54	AF9	I	125	145	Right-handed alpha
Helix 55	AG1	I	150	165	Right-handed alpha
Helix 56	AG2	I	166	173	Right-handed alpha
Helix 57	AG3	I	174	175	Right-handed 310
Helix 58	AG4	I	176	181	Right-handed 310
Helix 59	AG5	J	77	98	Right-handed alpha
Helix 60	AG6	K	25	48	Right-handed alpha
Helix 61	AG7	K	57	62	Right-handed alpha
Helix 62	AG8	K	69	82	Right-handed alpha
Helix 63	AG9	K	84	88	Right-handed 310
Helix 64	AH1	K	89	101	Right-handed alpha
Helix 65	AH2	K	106	117	Right-handed alpha
Helix 66	AH3	K	125	145	Right-handed alpha
Helix 67	AH4	K	150	165	Right-handed alpha
Helix 68	AH5	K	166	174	Right-handed alpha
Helix 69	AH6	K	176	181	Right-handed 310
Helix 70	AH7	L	77	97	Right-handed alpha
Helix 71	AH8	M	25	48	Right-handed alpha
Helix 72	AH9	M	57	63	Right-handed alpha
Helix 73	AI1	M	70	82	Right-handed alpha
Helix 74	AI2	M	82	87	Right-handed alpha
Helix 75	AI3	M	89	101	Right-handed alpha
Helix 76	AI4	M	106	120	Right-handed alpha
Helix 77	AI5	M	124	145	Right-handed alpha
Helix 78	AI6	M	150	164	Right-handed alpha
Helix 79	AI7	M	166	175	Right-handed alpha
Helix 80	AI8	M	176	183	Right-handed 310
Helix 81	AI9	N	77	93	Right-handed alpha
Helix 82	AJ1	O	25	47	Right-handed alpha
Helix 83	AJ2	O	57	62	Right-handed alpha
Helix 84	AJ3	O	69	81	Right-handed alpha
Helix 85	AJ4	O	83	88	Right-handed alpha
Helix 86	AJ5	O	90	95	Right-handed alpha
Helix 87	AJ6	O	95	100	Right-handed alpha
Helix 88	AJ7	O	106	121	Right-handed alpha
Helix 89	AJ8	O	125	146	Right-handed alpha
Helix 90	AJ9	O	150	164	Right-handed alpha
Helix 91	AK1	O	167	174	Right-handed alpha
Helix 92	AK2	O	176	181	Right-handed 310
Helix 93	AK3	P	78	94	Right-handed alpha
Helix 94	AK4	Q	23	48	Right-handed alpha
Helix 95	AK5	Q	57	62	Right-handed alpha
Helix 96	AK6	Q	69	81	Right-handed alpha
Helix 97	AK7	Q	85	101	Right-handed alpha
Helix 98	AK8	Q	106	121	Right-handed alpha
Helix 99	AK9	Q	125	142	Right-handed alpha
Helix 100	AL1	Q	150	165	Right-handed alpha
Helix 101	AL2	Q	167	173	Right-handed alpha
Helix 102	AL3	Q	176	180	Right-handed 310
Helix 103	AL4	R	77	98	Right-handed alpha
Helix 104	AL5	S	23	47	Right-handed alpha
Helix 105	AL6	S	57	62	Right-handed alpha
Helix 106	AL7	S	69	82	Right-handed alpha
Helix 107	AL8	S	83	88	Right-handed alpha
Helix 108	AL9	S	89	101	Right-handed alpha
Helix 109	AM1	S	106	120	Right-handed alpha
Helix 110	AM2	S	124	145	Right-handed alpha
Helix 111	AM3	S	150	163	Right-handed alpha
Helix 112	AM4	S	166	175	Right-handed alpha
Helix 113	AM5	S	177	182	Right-handed 310
Helix 114	AM6	T	77	98	Right-handed alpha
Helix 115	AM7	U	23	48	Right-handed alpha
Helix 116	AM8	U	58	62	Right-handed alpha
Helix 117	AM9	U	69	82	Right-handed alpha
Helix 118	AN1	U	84	89	Right-handed alpha
Helix 119	AN2	U	89	101	Right-handed alpha
Helix 120	AN3	U	105	120	Right-handed alpha
Helix 121	AN4	U	125	145	Right-handed alpha
Helix 122	AN5	U	150	164	Right-handed alpha
Helix 123	AN6	U	166	174	Right-handed alpha
Helix 124	AN7	U	175	180	Right-handed 310
Helix 125	AN8	V	78	98	Right-handed alpha
Helix 126	AN9	W	23	47	Right-handed alpha
Helix 127	AO1	W	57	62	Right-handed alpha
Helix 128	AO2	W	69	82	Right-handed alpha
Helix 129	AO3	W	84	88	Right-handed 310
Helix 130	AO4	W	89	101	Right-handed alpha
Helix 131	AO5	W	106	119	Right-handed alpha
Helix 132	AO6	W	124	144	Right-handed alpha
Helix 133	AO7	W	150	164	Right-handed alpha
Helix 134	AO8	W	167	172	Right-handed alpha
Helix 135	AO9	W	173	175	Right-handed 310
Helix 136	AP1	W	177	181	Right-handed 310
Helix 137	AP2	X	77	98	Right-handed alpha

There are 5 sheets in PDB entry 8GSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	K	122	124	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	E	122	124	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	124	first strand
Strand 2	I	122	124	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	122	124	first strand
Strand 2	Q	122	124	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	122	123	first strand
Strand 2	U	123	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSV