Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GSX entry

There is 1 chain in PDB entry 8GSX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 39ASP 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8GSX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
219 223Right-handed 310
Helix 2
AA2
A
261 268Right-handed alpha
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There are 3 sheets in PDB entry 8GSX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
55 56first strand
Strand 3
A
61 68anti-parallel
Strand 4
A
84 85first strand
Strand 5
A
90 94first strand
Strand 6
A
111 114anti-parallel
Strand 7
A
126 134anti-parallel
Strand 8
A
143 148anti-parallel
Strand 9
A
155 161anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
206 212anti-parallel
Strand 3
A
289 298anti-parallel
Strand 4
A
239 251anti-parallel
Strand 5
A
259 260anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 189first strand
Strand 2
A
192 199anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
305 313anti-parallel
Strand 5
A
225 234anti-parallel
Strand 6
A
277 286anti-parallel
Strand 7
A
271 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il