Analysis of interatomic Contacts of Structural Units in PDB entry:
8GT0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GT0 entry

There are 5 chains in PDB entry 8GT0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1GLU 241
B
 MET 1PHE 98
C
 GLN 1GLU 241
D
 MET 1PHE 98
E
 MET 1GLY 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8GT0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
25 27Right-handed 310
Helix 3
AA3
A
41 58Right-handed alpha
Helix 4
AA4
A
68 73Right-handed alpha
Helix 5
AA5
A
85 96Right-handed alpha
Helix 6
AA6
A
137 142Right-handed alpha
Helix 7
AA7
A
227 231Right-handed 310
Helix 8
AA8
B
90 94Right-handed 310
Helix 9
AA9
C
42 60Right-handed alpha
Helix 10
AB1
C
67 74Right-handed alpha
Helix 11
AB2
C
78 82Right-handed 310
Helix 12
AB3
C
91 96Right-handed alpha
Helix 13
AB4
C
209 214Right-handed alpha
Helix 14
AB5
D
16 21Right-handed alpha
Helix 15
AB6
D
25 30Right-handed alpha
Helix 16
AB7
E
11 15Right-handed 310
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There are 9 sheets in PDB entry 8GT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
175 182anti-parallel
Strand 3
A
146 149anti-parallel
Strand 4
A
232 239anti-parallel
Strand 5
A
127 130anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
175 182anti-parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
217 219anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
194 196anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 47first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
63 70anti-parallel
Strand 4
B
81 86anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 147first strand
Strand 2
C
177 181anti-parallel
Strand 3
C
200 203anti-parallel
Strand 4
C
215 218anti-parallel
Strand 5
C
163 164parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 190first strand
Strand 2
C
193 194anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 11first strand
Strand 2
D
42 43anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 46first strand
Strand 2
D
52 53anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 70first strand
Strand 2
D
81 84anti-parallel
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