Analysis of interatomic Contacts of Structural Units in PDB entry:
8GT6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GT6 entry

There are 2 chains in PDB entry 8GT6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLU 337
B
 SER 5GLU 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8GT6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 36Right-handed alpha
Helix 2
AA2
A
42 70Right-handed alpha
Helix 3
AA3
A
73 78Right-handed alpha
Helix 4
AA4
A
80 88Right-handed alpha
Helix 5
AA5
A
91 108Right-handed alpha
Helix 6
AA6
A
117 134Right-handed alpha
Helix 7
AA7
A
140 149Right-handed alpha
Helix 8
AA8
A
156 167Right-handed alpha
Helix 9
AA9
A
167 186Right-handed alpha
Helix 10
AB1
A
262 274Right-handed alpha
Helix 11
AB2
A
280 299Right-handed alpha
Helix 12
AB3
A
324 335Right-handed alpha
Helix 13
AB4
B
16 36Right-handed alpha
Helix 14
AB5
B
42 70Right-handed alpha
Helix 15
AB6
B
73 78Right-handed alpha
Helix 16
AB7
B
80 88Right-handed alpha
Helix 17
AB8
B
91 108Right-handed alpha
Helix 18
AB9
B
117 134Right-handed alpha
Helix 19
AC1
B
140 149Right-handed alpha
Helix 20
AC2
B
156 167Right-handed alpha
Helix 21
AC3
B
167 186Right-handed alpha
Helix 22
AC4
B
262 274Right-handed alpha
Helix 23
AC5
B
280 299Right-handed alpha
Helix 24
AC6
B
324 335Right-handed alpha
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There are 2 sheets in PDB entry 8GT6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 249first strand
Strand 2
A
252 260anti-parallel
Strand 3
A
198 203parallel
Strand 4
A
309 314parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 249first strand
Strand 2
B
252 260anti-parallel
Strand 3
B
198 203parallel
Strand 4
B
309 314parallel
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