Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GTA entry

There are 7 chains in PDB entry 8GTA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	ALA 291
C	GLY 24	ALA 291
D	GLY 24	ALA 291
E	GLY 24	ALA 291
F	GLY 24	ALA 291
G	GLY 24	ALA 291
B	GLY 24	ALA 291

There are 48 helices in PDB entry 8GTA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	112	Right-handed alpha
Helix 2	AA2	A	116	139	Right-handed alpha
Helix 3	AA3	A	149	155	Right-handed alpha
Helix 4	AA4	A	156	158	Right-handed 310
Helix 5	AA5	A	167	180	Right-handed alpha
Helix 6	AA6	A	193	202	Right-handed alpha
Helix 7	AA7	A	281	283	Right-handed 310
Helix 8	AA8	C	106	112	Right-handed alpha
Helix 9	AA9	C	116	139	Right-handed alpha
Helix 10	AB1	C	149	155	Right-handed alpha
Helix 11	AB2	C	167	180	Right-handed alpha
Helix 12	AB3	C	193	203	Right-handed alpha
Helix 13	AB4	C	258	262	Right-handed 310
Helix 14	AB5	D	106	112	Right-handed alpha
Helix 15	AB6	D	119	139	Right-handed alpha
Helix 16	AB7	D	149	155	Right-handed alpha
Helix 17	AB8	D	156	158	Right-handed 310
Helix 18	AB9	D	167	180	Right-handed alpha
Helix 19	AC1	D	193	200	Right-handed alpha
Helix 20	AC2	D	258	262	Right-handed 310
Helix 21	AC3	D	281	283	Right-handed 310
Helix 22	AC4	E	106	112	Right-handed alpha
Helix 23	AC5	E	116	139	Right-handed alpha
Helix 24	AC6	E	149	155	Right-handed alpha
Helix 25	AC7	E	169	180	Right-handed alpha
Helix 26	AC8	E	193	200	Right-handed alpha
Helix 27	AC9	E	281	283	Right-handed 310
Helix 28	AD1	F	27	31	Right-handed 310
Helix 29	AD2	F	107	112	Right-handed alpha
Helix 30	AD3	F	116	139	Right-handed alpha
Helix 31	AD4	F	149	155	Right-handed alpha
Helix 32	AD5	F	156	158	Right-handed 310
Helix 33	AD6	F	167	180	Right-handed alpha
Helix 34	AD7	F	193	202	Right-handed alpha
Helix 35	AD8	F	240	242	Right-handed 310
Helix 36	AD9	F	281	285	Right-handed 310
Helix 37	AE1	G	107	112	Right-handed alpha
Helix 38	AE2	G	116	139	Right-handed alpha
Helix 39	AE3	G	149	155	Right-handed alpha
Helix 40	AE4	G	167	180	Right-handed alpha
Helix 41	AE5	G	193	202	Right-handed alpha
Helix 42	AE6	G	281	283	Right-handed 310
Helix 43	AE7	B	107	112	Right-handed alpha
Helix 44	AE8	B	116	139	Right-handed alpha
Helix 45	AE9	B	149	155	Right-handed alpha
Helix 46	AF1	B	167	180	Right-handed alpha
Helix 47	AF2	B	193	202	Right-handed alpha
Helix 48	AF3	B	281	283	Right-handed 310

There are 30 sheets in PDB entry 8GTA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	E	61	67	parallel
Strand 3	E	89	94	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	244	248	parallel
Strand 3	A	267	279	anti-parallel
Strand 4	A	255	257	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	244	248	parallel
Strand 3	A	267	279	anti-parallel
Strand 4	A	97	105	anti-parallel
Strand 5	E	74	75	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	62	67	anti-parallel
Strand 3	F	36	37	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	F	97	104	anti-parallel
Strand 3	F	266	279	anti-parallel
Strand 4	F	244	248	anti-parallel
Strand 5	F	54	57	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	F	97	104	anti-parallel
Strand 3	F	266	279	anti-parallel
Strand 4	F	253	261	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	189	192	parallel
Strand 3	A	236	239	anti-parallel
Strand 4	A	285	288	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	218	219	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	G	61	69	parallel
Strand 3	G	88	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	244	248	parallel
Strand 3	C	268	279	anti-parallel
Strand 4	C	253	255	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	244	248	parallel
Strand 3	C	268	279	anti-parallel
Strand 4	C	97	104	anti-parallel
Strand 5	G	74	75	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	67	first strand
Strand 2	C	89	94	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	D	97	103	anti-parallel
Strand 3	D	268	279	anti-parallel
Strand 4	D	244	248	anti-parallel
Strand 5	D	54	57	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	D	97	103	anti-parallel
Strand 3	D	268	279	anti-parallel
Strand 4	D	255	257	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	189	192	parallel
Strand 3	C	236	239	anti-parallel
Strand 4	C	285	287	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	E	35	37	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	268	279	anti-parallel
Strand 4	E	244	248	anti-parallel
Strand 5	E	54	57	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	268	279	anti-parallel
Strand 4	E	253	257	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	285	289	parallel
Strand 3	D	236	239	anti-parallel
Strand 4	D	189	192	anti-parallel
Strand 5	D	223	224	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	192	first strand
Strand 2	E	236	239	anti-parallel
Strand 3	E	285	286	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	219	first strand
Strand 2	E	222	223	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	94	first strand
Strand 2	F	62	67	anti-parallel
Strand 3	G	36	37	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	75	first strand
Strand 2	G	97	106	anti-parallel
Strand 3	G	266	279	anti-parallel
Strand 4	G	244	248	anti-parallel
Strand 5	G	54	57	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	75	first strand
Strand 2	G	97	106	anti-parallel
Strand 3	G	266	279	anti-parallel
Strand 4	G	256	257	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	226	first strand
Strand 2	F	189	192	parallel
Strand 3	F	236	238	anti-parallel
Strand 4	F	286	287	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	159	160	first strand
Strand 2	G	285	289	parallel
Strand 3	G	236	239	anti-parallel
Strand 4	G	189	192	anti-parallel
Strand 5	G	222	226	parallel
Strand 6	G	218	219	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	244	248	parallel
Strand 3	B	267	279	anti-parallel
Strand 4	B	97	105	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	244	248	parallel
Strand 3	B	267	279	anti-parallel
Strand 4	B	253	257	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	68	first strand
Strand 2	B	88	94	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	189	192	parallel
Strand 3	B	236	239	anti-parallel
Strand 4	B	285	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GTA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTA