Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GTJ entry

There are 4 chains in PDB entry 8GTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -4	ALA 399
B	TYR 27	MET 262
C	SER 3	GLU 400
D	TYR 27	MET 262

There are 36 helices in PDB entry 8GTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	18	Right-handed alpha
Helix 2	AA2	A	27	31	Right-handed 310
Helix 3	AA3	A	84	89	Right-handed alpha
Helix 4	AA4	A	126	132	Right-handed alpha
Helix 5	AA5	A	143	148	Right-handed alpha
Helix 6	AA6	A	176	180	Right-handed 310
Helix 7	AA7	A	244	258	Right-handed alpha
Helix 8	AA8	A	260	273	Right-handed alpha
Helix 9	AA9	A	277	295	Right-handed alpha
Helix 10	AB1	A	303	310	Right-handed alpha
Helix 11	AB2	A	318	332	Right-handed alpha
Helix 12	AB3	A	333	335	Right-handed 310
Helix 13	AB4	A	338	348	Right-handed alpha
Helix 14	AB5	A	350	366	Right-handed alpha
Helix 15	AB6	A	368	372	Right-handed 310
Helix 16	AB7	A	379	398	Right-handed alpha
Helix 17	AB8	B	28	36	Right-handed alpha
Helix 18	AB9	B	43	58	Right-handed alpha
Helix 19	AC1	B	217	223	Right-handed 310
Helix 20	AC2	B	237	250	Right-handed alpha
Helix 21	AC3	C	4	18	Right-handed alpha
Helix 22	AC4	C	29	33	Right-handed 310
Helix 23	AC5	C	126	132	Right-handed alpha
Helix 24	AC6	C	143	148	Right-handed alpha
Helix 25	AC7	C	176	183	Right-handed alpha
Helix 26	AC8	C	245	259	Right-handed alpha
Helix 27	AC9	C	260	275	Right-handed alpha
Helix 28	AD1	C	277	294	Right-handed alpha
Helix 29	AD2	C	323	334	Right-handed alpha
Helix 30	AD3	C	338	348	Right-handed alpha
Helix 31	AD4	C	350	362	Right-handed alpha
Helix 32	AD5	C	379	399	Right-handed alpha
Helix 33	AD6	D	28	37	Right-handed alpha
Helix 34	AD7	D	43	58	Right-handed alpha
Helix 35	AD8	D	217	223	Right-handed 310
Helix 36	AD9	D	237	250	Right-handed alpha

There are 8 sheets in PDB entry 8GTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	204	213	anti-parallel
Strand 3	A	154	164	anti-parallel
Strand 4	A	117	125	anti-parallel
Strand 5	A	90	99	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	57	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	154	164	anti-parallel
Strand 4	A	204	213	anti-parallel
Strand 5	A	219	223	anti-parallel
Strand 6	A	136	137	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	168	172	anti-parallel
Strand 3	A	195	199	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	81	83	parallel
Strand 3	B	101	103	parallel
Strand 4	B	121	123	parallel
Strand 5	B	141	143	parallel
Strand 6	B	161	163	parallel
Strand 7	B	181	183	parallel
Strand 8	B	204	207	parallel
Strand 9	B	227	230	parallel
Strand 10	B	257	259	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	204	213	anti-parallel
Strand 3	C	154	164	anti-parallel
Strand 4	C	117	125	anti-parallel
Strand 5	C	90	99	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	57	first strand
Strand 2	C	38	45	anti-parallel
Strand 3	C	154	164	anti-parallel
Strand 4	C	204	213	anti-parallel
Strand 5	C	219	223	anti-parallel
Strand 6	C	136	137	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	196	199	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	81	83	parallel
Strand 3	D	101	103	parallel
Strand 4	D	121	123	parallel
Strand 5	D	141	143	parallel
Strand 6	D	161	163	parallel
Strand 7	D	181	183	parallel
Strand 8	D	204	207	parallel
Strand 9	D	227	230	parallel
Strand 10	D	257	259	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTJ