Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GTK entry

There are 2 chains in PDB entry 8GTK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ALA 382
B
 HIS 26SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8GTK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
58 62Right-handed alpha
Helix 4
AA4
A
70 75Right-handed 310
Helix 5
AA5
A
113 122Right-handed alpha
Helix 6
AA6
A
130 135Right-handed alpha
Helix 7
AA7
A
227 241Right-handed alpha
Helix 8
AA8
A
243 257Right-handed alpha
Helix 9
AA9
A
260 278Right-handed alpha
Helix 10
AB1
A
286 294Right-handed alpha
Helix 11
AB2
A
301 316Right-handed alpha
Helix 12
AB3
A
321 330Right-handed alpha
Helix 13
AB4
A
333 349Right-handed alpha
Helix 14
AB5
A
363 382Right-handed alpha
Helix 15
AB6
B
27 37Right-handed alpha
Helix 16
AB7
B
43 57Right-handed alpha
Helix 17
AB8
B
217 223Right-handed 310
Helix 18
AB9
B
237 248Right-handed alpha
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There are 4 sheets in PDB entry 8GTK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
191 197anti-parallel
Strand 3
A
144 151anti-parallel
Strand 4
A
104 112anti-parallel
Strand 5
A
77 86anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
50 57anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
155 159anti-parallel
Strand 3
A
182 186anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
81 83parallel
Strand 3
B
101 103parallel
Strand 4
B
121 123parallel
Strand 5
B
141 143parallel
Strand 6
B
161 163parallel
Strand 7
B
181 183parallel
Strand 8
B
204 207parallel
Strand 9
B
227 230parallel
Strand 10
B
257 259parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il