Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GTL entry

There are 2 chains in PDB entry 8GTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9TRP 409
B
 THR 9TRP 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8GTL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 33Right-handed 310
Helix 2
AA2
A
34 40Right-handed alpha
Helix 3
AA3
A
40 45Right-handed alpha
Helix 4
AA4
A
64 73Right-handed alpha
Helix 5
AA5
A
104 117Right-handed alpha
Helix 6
AA6
A
117 123Right-handed alpha
Helix 7
AA7
A
124 137Right-handed alpha
Helix 8
AA8
A
146 151Right-handed alpha
Helix 9
AA9
A
154 164Right-handed alpha
Helix 10
AB1
A
169 175Right-handed alpha
Helix 11
AB2
A
175 183Right-handed alpha
Helix 12
AB3
A
189 205Right-handed alpha
Helix 13
AB4
A
207 212Right-handed alpha
Helix 14
AB5
A
223 228Right-handed alpha
Helix 15
AB6
A
237 255Right-handed alpha
Helix 16
AB7
A
256 269Right-handed alpha
Helix 17
AB8
A
270 280Right-handed alpha
Helix 18
AB9
A
282 287Right-handed alpha
Helix 19
AC1
A
288 295Right-handed alpha
Helix 20
AC2
A
325 330Right-handed alpha
Helix 21
AC3
A
362 378Right-handed alpha
Helix 22
AC4
B
30 33Right-handed 310
Helix 23
AC5
B
34 40Right-handed alpha
Helix 24
AC6
B
41 43Right-handed 310
Helix 25
AC7
B
64 73Right-handed alpha
Helix 26
AC8
B
104 117Right-handed alpha
Helix 27
AC9
B
117 123Right-handed alpha
Helix 28
AD1
B
124 137Right-handed alpha
Helix 29
AD2
B
147 151Right-handed alpha
Helix 30
AD3
B
154 165Right-handed alpha
Helix 31
AD4
B
167 169Right-handed 310
Helix 32
AD5
B
170 183Right-handed alpha
Helix 33
AD6
B
188 212Right-handed alpha
Helix 34
AD7
B
221 228Right-handed alpha
Helix 35
AD8
B
238 255Right-handed alpha
Helix 36
AD9
B
256 269Right-handed alpha
Helix 37
AE1
B
270 280Right-handed alpha
Helix 38
AE2
B
282 287Right-handed alpha
Helix 39
AE3
B
288 295Right-handed alpha
Helix 40
AE4
B
325 330Right-handed alpha
Helix 41
AE5
B
362 378Right-handed alpha
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There are 7 sheets in PDB entry 8GTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
59 62anti-parallel
Strand 3
A
320 324parallel
Strand 4
A
299 304anti-parallel
Strand 5
A
78 79anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
407 408anti-parallel
Strand 3
A
385 386anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
313 315anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
320 324parallel
Strand 4
B
299 304anti-parallel
Strand 5
B
78 79anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
406 408anti-parallel
Strand 3
B
385 386anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
313 315anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 395first strand
Strand 2
B
401 403anti-parallel
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