Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GTM entry

There are 2 chains in PDB entry 8GTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 103SER 368
B
 ASN 1000TYR 1159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8GTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 144Right-handed alpha
Helix 2
AA2
A
145 148Right-handed 310
Helix 3
AA3
A
149 174Right-handed alpha
Helix 4
AA4
A
177 184Right-handed alpha
Helix 5
AA5
A
185 217Right-handed alpha
Helix 6
AA6
A
227 236Right-handed alpha
Helix 7
AA7
A
238 254Right-handed alpha
Helix 8
AA8
A
256 260Right-handed 310
Helix 9
AA9
A
269 296Right-handed alpha
Helix 10
AB1
A
303 330Right-handed alpha
Helix 11
AB2
A
337 354Right-handed alpha
Helix 12
AB3
A
354 368Right-handed alpha
Helix 13
AB4
B
1001 1010Right-handed alpha
Helix 14
AB5
B
1036 1049Right-handed alpha
Helix 15
AB6
B
1057 1079Right-handed alpha
Helix 16
AB7
B
1082 1088Right-handed alpha
Helix 17
AB8
B
1090 1111Right-handed alpha
Helix 18
AB9
B
1112 1121Right-handed alpha
Helix 19
AC1
B
1123 1133Right-handed alpha
Helix 20
AC2
B
1134 1140Right-handed alpha
Helix 21
AC3
B
1140 1154Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8GTM.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1012 1017first strand
Strand 2
B
1023 1026anti-parallel
Strand 3
B
1029 1032anti-parallel
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