Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GTX entry

There are 2 chains in PDB entry 8GTX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45THR 261
B
 ALA 1ILE 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 8GTX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 52Right-handed 310
Helix 2
AA2
A
125 133Right-handed alpha
Helix 3
AA3
A
180 187Right-handed alpha
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There are 3 sheets in PDB entry 8GTX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
83 91anti-parallel
Strand 3
A
70 80anti-parallel
Strand 4
A
56 62anti-parallel
Strand 5
A
108 117anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
148 158anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
190 192anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
227 235anti-parallel
Strand 3
A
242 247anti-parallel
Strand 4
A
254 260anti-parallel
Strand 5
B
3 9parallel
Strand 6
B
14 18anti-parallel
Strand 7
A
217 221parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il