Analysis of interatomic Contacts of Structural Units in PDB entry:
8GTZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GTZ entry

There is 1 chain in PDB entry 8GTZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8GTZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 72Right-handed alpha
Helix 2
AA2
A
75 96Right-handed alpha
Helix 3
AA3
A
107 111Right-handed alpha
Helix 4
AA4
A
114 125Right-handed alpha
Helix 5
AA5
A
133 149Right-handed alpha
Helix 6
AA6
A
183 194Right-handed alpha
Helix 7
AA7
A
196 207Right-handed alpha
Helix 8
AA8
A
211 216Right-handed 310
Helix 9
AA9
A
224 238Right-handed alpha
Helix 10
AB1
A
254 265Right-handed alpha
Helix 11
AB2
A
283 298Right-handed alpha
Helix 12
AB3
A
309 318Right-handed alpha
Helix 13
AB4
A
320 325Right-handed alpha
Helix 14
AB5
A
327 341Right-handed alpha
Helix 15
AB6
A
346 355Right-handed alpha
Helix 16
AB7
A
356 358Right-handed 310
Helix 17
AB8
A
362 364Right-handed 310
Helix 18
AB9
A
365 375Right-handed alpha
Helix 19
AC1
A
383 385Right-handed 310
Helix 20
AC2
A
386 397Right-handed alpha
Helix 21
AC3
A
404 419Right-handed alpha
Helix 22
AC4
A
433 455Right-handed alpha
Helix 23
AC5
A
457 462Right-handed 310
Helix 24
AC6
A
480 484Right-handed 310
Helix 25
AC7
A
485 499Right-handed alpha
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There are 3 sheets in PDB entry 8GTZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 61first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
100 106parallel
Strand 5
A
129 132parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 180first strand
Strand 2
A
164 170anti-parallel
Strand 3
A
154 159anti-parallel
Strand 4
A
219 223parallel
Strand 5
A
302 305parallel
Strand 6
A
249 250anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 469first strand
Strand 2
A
472 477anti-parallel
Strand 3
A
502 507parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il