Analysis of interatomic Contacts of Structural Units in PDB entry:
8GU0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GU0 entry

There are 2 chains in PDB entry 8GU0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 519
B	SER 2	ARG 519

There are 33 helices in PDB entry 8GU0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	62	70	Right-handed alpha
Helix 4	AA4	A	91	96	Right-handed alpha
Helix 5	AA5	A	105	120	Right-handed alpha
Helix 6	AA6	A	182	188	Right-handed alpha
Helix 7	AA7	A	253	258	Right-handed alpha
Helix 8	AA8	A	267	279	Right-handed alpha
Helix 9	AA9	A	280	287	Right-handed alpha
Helix 10	AB1	A	318	321	Right-handed 310
Helix 11	AB2	A	325	329	Right-handed 310
Helix 12	AB3	A	330	351	Right-handed alpha
Helix 13	AB4	A	355	387	Right-handed alpha
Helix 14	AB5	A	401	408	Right-handed alpha
Helix 15	AB6	A	408	413	Right-handed alpha
Helix 16	AB7	A	425	440	Right-handed alpha
Helix 17	AB8	B	15	27	Right-handed alpha
Helix 18	AB9	B	52	60	Right-handed alpha
Helix 19	AC1	B	62	70	Right-handed alpha
Helix 20	AC2	B	91	96	Right-handed alpha
Helix 21	AC3	B	105	120	Right-handed alpha
Helix 22	AC4	B	182	188	Right-handed alpha
Helix 23	AC5	B	253	258	Right-handed alpha
Helix 24	AC6	B	268	279	Right-handed alpha
Helix 25	AC7	B	280	287	Right-handed alpha
Helix 26	AC8	B	318	321	Right-handed 310
Helix 27	AC9	B	325	329	Right-handed 310
Helix 28	AD1	B	330	351	Right-handed alpha
Helix 29	AD2	B	355	387	Right-handed alpha
Helix 30	AD3	B	391	395	Right-handed 310
Helix 31	AD4	B	401	408	Right-handed alpha
Helix 32	AD5	B	408	413	Right-handed alpha
Helix 33	AD6	B	425	441	Right-handed alpha

There are 12 sheets in PDB entry 8GU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	126	first strand
Strand 2	A	32	36	parallel
Strand 3	A	9	12	parallel
Strand 4	A	173	176	parallel
Strand 5	A	314	316	parallel
Strand 6	A	308	311	anti-parallel
Strand 7	A	147	148	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	101	103	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	224	227	parallel
Strand 4	A	233	239	anti-parallel
Strand 5	A	244	252	anti-parallel
Strand 6	A	192	208	anti-parallel
Strand 7	A	291	292	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	224	227	parallel
Strand 4	A	233	239	anti-parallel
Strand 5	A	244	252	anti-parallel
Strand 6	A	192	208	anti-parallel
Strand 7	A	297	306	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	136	first strand
Strand 2	A	153	161	anti-parallel
Strand 3	A	166	170	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	516	518	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	32	36	parallel
Strand 3	B	6	12	parallel
Strand 4	B	166	176	parallel
Strand 5	B	153	161	anti-parallel
Strand 6	B	128	136	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	32	36	parallel
Strand 3	B	6	12	parallel
Strand 4	B	166	176	parallel
Strand 5	B	314	316	parallel
Strand 6	B	310	311	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	101	103	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	224	227	parallel
Strand 4	B	233	239	anti-parallel
Strand 5	B	245	252	anti-parallel
Strand 6	B	192	208	anti-parallel
Strand 7	B	291	292	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	224	227	parallel
Strand 4	B	233	239	anti-parallel
Strand 5	B	245	252	anti-parallel
Strand 6	B	192	208	anti-parallel
Strand 7	B	297	306	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	516	518	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GU0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GU0