Analysis of interatomic Contacts of Structural Units in PDB entry:
8GU6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GU6 entry

There are 4 chains in PDB entry 8GU6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 15	PRO 715
A	MET 6	PHE 1691
C	G -18	C 15
J	G 24	U 40

There are 73 helices in PDB entry 8GU6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	15	33	Right-handed alpha
Helix 2	AA2	D	37	59	Right-handed alpha
Helix 3	AA3	D	64	82	Right-handed alpha
Helix 4	AA4	D	90	110	Right-handed alpha
Helix 5	AA5	D	114	136	Right-handed alpha
Helix 6	AA6	D	141	156	Right-handed alpha
Helix 7	AA7	D	163	176	Right-handed alpha
Helix 8	AA8	D	180	182	Right-handed 310
Helix 9	AA9	D	183	190	Right-handed alpha
Helix 10	AB1	D	194	205	Right-handed alpha
Helix 11	AB2	D	208	224	Right-handed alpha
Helix 12	AB3	D	230	246	Right-handed alpha
Helix 13	AB4	D	250	269	Right-handed alpha
Helix 14	AB5	D	280	297	Right-handed alpha
Helix 15	AB6	D	302	322	Right-handed alpha
Helix 16	AB7	D	327	332	Right-handed alpha
Helix 17	AB8	D	339	359	Right-handed alpha
Helix 18	AB9	D	433	448	Right-handed alpha
Helix 19	AC1	D	451	453	Right-handed 310
Helix 20	AC2	D	454	469	Right-handed alpha
Helix 21	AC3	D	470	473	Right-handed 310
Helix 22	AC4	D	496	500	Right-handed 310
Helix 23	AC5	D	509	514	Right-handed alpha
Helix 24	AC6	D	521	525	Right-handed 310
Helix 25	AC7	D	566	572	Right-handed alpha
Helix 26	AC8	D	592	595	Right-handed 310
Helix 27	AC9	D	607	613	Right-handed alpha
Helix 28	AD1	D	628	632	Right-handed 310
Helix 29	AD2	D	644	653	Right-handed alpha
Helix 30	AD3	D	665	675	Right-handed alpha
Helix 31	AD4	D	685	691	Right-handed alpha
Helix 32	AD5	D	699	708	Right-handed alpha
Helix 33	AD6	A	25	30	Right-handed alpha
Helix 34	AD7	A	32	38	Right-handed alpha
Helix 35	AD8	A	59	78	Right-handed alpha
Helix 36	AD9	A	127	134	Right-handed alpha
Helix 37	AE1	A	168	173	Right-handed alpha
Helix 38	AE2	A	213	215	Right-handed 310
Helix 39	AE3	A	216	227	Right-handed alpha
Helix 40	AE4	A	272	287	Right-handed alpha
Helix 41	AE5	A	292	303	Right-handed alpha
Helix 42	AE6	A	308	313	Right-handed alpha
Helix 43	AE7	A	338	350	Right-handed alpha
Helix 44	AE8	A	354	375	Right-handed alpha
Helix 45	AE9	A	471	488	Right-handed alpha
Helix 46	AF1	A	503	510	Right-handed alpha
Helix 47	AF2	A	569	580	Right-handed alpha
Helix 48	AF3	A	594	598	Right-handed 310
Helix 49	AF4	A	617	624	Right-handed alpha
Helix 50	AF5	A	625	628	Right-handed 310
Helix 51	AF6	A	630	637	Right-handed alpha
Helix 52	AF7	A	654	657	Right-handed 310
Helix 53	AF8	A	658	665	Right-handed alpha
Helix 54	AF9	A	687	693	Right-handed alpha
Helix 55	AG1	A	723	740	Right-handed alpha
Helix 56	AG2	A	752	759	Right-handed alpha
Helix 57	AG3	A	831	848	Right-handed alpha
Helix 58	AG4	A	873	881	Right-handed alpha
Helix 59	AG5	A	909	914	Right-handed alpha
Helix 60	AG6	A	999	1015	Right-handed alpha
Helix 61	AG7	A	1395	1399	Right-handed 310
Helix 62	AG8	A	1408	1412	Right-handed 310
Helix 63	AG9	A	1414	1421	Right-handed alpha
Helix 64	AH1	A	1463	1468	Right-handed alpha
Helix 65	AH2	A	1486	1493	Right-handed alpha
Helix 66	AH3	A	1493	1499	Right-handed alpha
Helix 67	AH4	A	1528	1540	Right-handed alpha
Helix 68	AH5	A	1552	1556	Right-handed 310
Helix 69	AH6	A	1583	1588	Right-handed alpha
Helix 70	AH7	A	1590	1601	Right-handed alpha
Helix 71	AH8	A	1615	1618	Right-handed 310
Helix 72	AH9	A	1619	1629	Right-handed alpha
Helix 73	AI1	A	1675	1681	Right-handed alpha

There are 22 sheets in PDB entry 8GU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	431	first strand
Strand 2	D	414	420	anti-parallel
Strand 3	D	400	406	anti-parallel
Strand 4	D	483	487	parallel
Strand 5	D	516	518	parallel
Strand 6	D	709	712	parallel
Strand 7	D	657	660	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	562	563	first strand
Strand 2	D	536	540	parallel
Strand 3	D	579	583	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	597	598	first strand
Strand 2	D	605	606	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	42	45	parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	156	158	anti-parallel
Strand 5	A	205	211	anti-parallel
Strand 6	A	151	153	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	42	45	parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	156	158	anti-parallel
Strand 5	A	205	211	anti-parallel
Strand 6	A	7	11	anti-parallel
Strand 7	A	238	239	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	404	405	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	181	first strand
Strand 2	A	188	194	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	233	234	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	556	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	609	anti-parallel
Strand 5	A	589	590	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	530	first strand
Strand 2	A	546	550	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	722	first strand
Strand 2	A	772	774	anti-parallel
Strand 3	A	818	827	anti-parallel
Strand 4	A	767	769	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	722	first strand
Strand 2	A	772	774	anti-parallel
Strand 3	A	818	827	anti-parallel
Strand 4	A	669	678	anti-parallel
Strand 5	A	863	868	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	805	808	parallel
Strand 3	A	787	789	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	1642	1643	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1478	1481	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1519	1522	first strand
Strand 2	A	954	960	anti-parallel
Strand 3	A	1559	1567	anti-parallel
Strand 4	A	1547	1548	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	987	first strand
Strand 2	A	1507	1510	parallel
Strand 3	A	1453	1455	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	995	996	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1647	1648	first strand
Strand 2	A	1662	1663	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GU6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GU6