Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GUA entry

There is 1 chain in PDB entry 8GUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 107GLY 1050
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8GUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 122Right-handed alpha
Helix 2
AA2
A
125 130Right-handed alpha
Helix 3
AA3
A
133 141Right-handed alpha
Helix 4
AA4
A
144 146Right-handed 310
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
159 167Right-handed alpha
Helix 7
AA7
A
178 184Right-handed alpha
Helix 8
AA8
A
218 229Right-handed alpha
Helix 9
AA9
A
270 280Right-handed alpha
Helix 10
AB1
A
290 295Right-handed alpha
Helix 11
AB2
A
305 309Right-handed 310
Helix 12
AB3
A
328 330Right-handed 310
Helix 13
AB4
A
394 396Right-handed 310
Helix 14
AB5
A
488 500Right-handed alpha
Helix 15
AB6
A
525 537Right-handed alpha
Helix 16
AB7
A
544 554Right-handed alpha
Helix 17
AB8
A
554 559Right-handed alpha
Helix 18
AB9
A
561 563Right-handed 310
Helix 19
AC1
A
564 572Right-handed alpha
Helix 20
AC2
A
576 589Right-handed alpha
Helix 21
AC3
A
594 601Right-handed alpha
Helix 22
AC4
A
608 623Right-handed alpha
Helix 23
AC5
A
624 638Right-handed alpha
Helix 24
AC6
A
647 658Right-handed alpha
Helix 25
AC7
A
660 674Right-handed alpha
Helix 26
AC8
A
680 695Right-handed alpha
Helix 27
AC9
A
697 722Right-handed alpha
Helix 28
AD1
A
729 740Right-handed alpha
Helix 29
AD2
A
741 748Right-handed alpha
Helix 30
AD3
A
765 769Right-handed 310
Helix 31
AD4
A
789 793Right-handed 310
Helix 32
AD5
A
807 827Right-handed alpha
Helix 33
AD6
A
857 861Right-handed alpha
Helix 34
AD7
A
875 884Right-handed alpha
Helix 35
AD8
A
889 911Right-handed alpha
Helix 36
AD9
A
958 965Right-handed alpha
Helix 37
AE1
A
974 994Right-handed alpha
Helix 38
AE2
A
994 1001Right-handed alpha
Helix 39
AE3
A
1004 1009Right-handed 310
Helix 40
AE4
A
1010 1014Right-handed 310
Helix 41
AE5
A
1015 1018Right-handed 310
Helix 42
AE6
A
1019 1027Right-handed alpha
Helix 43
AE7
A
1031 1047Right-handed alpha
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There are 7 sheets in PDB entry 8GUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 212first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 476anti-parallel
Strand 4
A
440 444anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
354 362anti-parallel
Strand 3
A
401 408anti-parallel
Strand 4
A
420 428anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 753first strand
Strand 2
A
756 760anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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