Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GUB entry

There are 2 chains in PDB entry 8GUB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 19	GLY 1050
B	ASN 323	LEU 598

There are 52 helices in PDB entry 8GUB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	88	93	Right-handed alpha
Helix 3	AA3	A	107	122	Right-handed alpha
Helix 4	AA4	A	125	131	Right-handed alpha
Helix 5	AA5	A	133	143	Right-handed alpha
Helix 6	AA6	A	143	155	Right-handed alpha
Helix 7	AA7	A	159	167	Right-handed alpha
Helix 8	AA8	A	178	183	Right-handed alpha
Helix 9	AA9	A	216	229	Right-handed alpha
Helix 10	AB1	A	270	280	Right-handed alpha
Helix 11	AB2	A	290	295	Right-handed alpha
Helix 12	AB3	A	305	310	Right-handed alpha
Helix 13	AB4	A	328	330	Right-handed 310
Helix 14	AB5	A	394	396	Right-handed 310
Helix 15	AB6	A	488	499	Right-handed alpha
Helix 16	AB7	A	527	536	Right-handed alpha
Helix 17	AB8	A	544	554	Right-handed alpha
Helix 18	AB9	A	555	558	Right-handed 310
Helix 19	AC1	A	561	563	Right-handed 310
Helix 20	AC2	A	564	571	Right-handed alpha
Helix 21	AC3	A	576	588	Right-handed alpha
Helix 22	AC4	A	594	599	Right-handed alpha
Helix 23	AC5	A	600	603	Right-handed 310
Helix 24	AC6	A	608	623	Right-handed alpha
Helix 25	AC7	A	624	631	Right-handed alpha
Helix 26	AC8	A	631	638	Right-handed alpha
Helix 27	AC9	A	647	658	Right-handed alpha
Helix 28	AD1	A	660	674	Right-handed alpha
Helix 29	AD2	A	680	695	Right-handed alpha
Helix 30	AD3	A	697	722	Right-handed alpha
Helix 31	AD4	A	727	741	Right-handed alpha
Helix 32	AD5	A	741	748	Right-handed alpha
Helix 33	AD6	A	807	828	Right-handed alpha
Helix 34	AD7	A	857	864	Right-handed alpha
Helix 35	AD8	A	875	885	Right-handed alpha
Helix 36	AD9	A	888	911	Right-handed alpha
Helix 37	AE1	A	939	945	Right-handed alpha
Helix 38	AE2	A	957	965	Right-handed alpha
Helix 39	AE3	A	974	994	Right-handed alpha
Helix 40	AE4	A	994	1004	Right-handed alpha
Helix 41	AE5	A	1005	1009	Right-handed 310
Helix 42	AE6	A	1015	1020	Right-handed alpha
Helix 43	AE7	A	1021	1026	Right-handed alpha
Helix 44	AE8	A	1031	1050	Right-handed alpha
Helix 45	AE9	B	339	347	Right-handed alpha
Helix 46	AF1	B	385	389	Right-handed 310
Helix 47	AF2	B	400	409	Right-handed alpha
Helix 48	AF3	B	412	416	Right-handed 310
Helix 49	AF4	B	429	435	Right-handed alpha
Helix 50	AF5	B	441	506	Right-handed alpha
Helix 51	AF6	B	518	584	Right-handed alpha
Helix 52	AF7	B	591	597	Right-handed 310

There are 13 sheets in PDB entry 8GUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	36	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	98	100	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	79	82	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	212	first strand
Strand 2	A	189	199	anti-parallel
Strand 3	A	284	289	parallel
Strand 4	A	250	254	anti-parallel
Strand 5	A	260	261	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	483	485	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	472	477	anti-parallel
Strand 4	A	439	444	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	353	359	anti-parallel
Strand 3	A	376	377	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	353	359	anti-parallel
Strand 3	A	403	409	anti-parallel
Strand 4	A	419	426	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	365	366	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	431	first strand
Strand 2	A	435	436	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	760	761	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	779	784	anti-parallel
Strand 3	A	796	803	anti-parallel
Strand 4	A	845	849	anti-parallel
Strand 5	A	838	840	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	369	374	anti-parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	426	427	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GUB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUB