Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GUD entry

There is 1 chain in PDB entry 8GUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 107GLY 1050
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8GUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 122Right-handed alpha
Helix 2
AA2
A
124 130Right-handed alpha
Helix 3
AA3
A
136 141Right-handed alpha
Helix 4
AA4
A
144 146Right-handed 310
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
159 167Right-handed alpha
Helix 7
AA7
A
178 184Right-handed alpha
Helix 8
AA8
A
216 225Right-handed alpha
Helix 9
AA9
A
266 269Right-handed 310
Helix 10
AB1
A
270 280Right-handed alpha
Helix 11
AB2
A
290 295Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
A
394 396Right-handed 310
Helix 14
AB5
A
488 497Right-handed alpha
Helix 15
AB6
A
528 536Right-handed alpha
Helix 16
AB7
A
544 554Right-handed alpha
Helix 17
AB8
A
554 559Right-handed alpha
Helix 18
AB9
A
561 563Right-handed 310
Helix 19
AC1
A
564 569Right-handed alpha
Helix 20
AC2
A
570 572Right-handed 310
Helix 21
AC3
A
576 585Right-handed alpha
Helix 22
AC4
A
594 599Right-handed alpha
Helix 23
AC5
A
600 603Right-handed 310
Helix 24
AC6
A
608 622Right-handed alpha
Helix 25
AC7
A
624 638Right-handed alpha
Helix 26
AC8
A
648 658Right-handed alpha
Helix 27
AC9
A
662 674Right-handed alpha
Helix 28
AD1
A
677 692Right-handed alpha
Helix 29
AD2
A
697 720Right-handed alpha
Helix 30
AD3
A
728 741Right-handed alpha
Helix 31
AD4
A
741 748Right-handed alpha
Helix 32
AD5
A
765 769Right-handed 310
Helix 33
AD6
A
807 823Right-handed alpha
Helix 34
AD7
A
857 862Right-handed alpha
Helix 35
AD8
A
875 884Right-handed alpha
Helix 36
AD9
A
889 899Right-handed alpha
Helix 37
AE1
A
901 906Right-handed alpha
Helix 38
AE2
A
906 911Right-handed alpha
Helix 39
AE3
A
959 965Right-handed alpha
Helix 40
AE4
A
974 992Right-handed alpha
Helix 41
AE5
A
994 1004Right-handed alpha
Helix 42
AE6
A
1015 1027Right-handed alpha
Helix 43
AE7
A
1033 1047Right-handed alpha
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There are 5 sheets in PDB entry 8GUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 212first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 476anti-parallel
Strand 4
A
440 444anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
402 407anti-parallel
Strand 3
A
421 427anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 840anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 923first strand
Strand 2
A
929 931anti-parallel
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