Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GUG entry

There are 3 chains in PDB entry 8GUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 156
B
 GLY 24SER 150
C
 LEU 23PHE 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8GUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
18 25Right-handed alpha
Helix 3
AA3
A
41 51Right-handed alpha
Helix 4
AA4
A
52 54Right-handed 310
Helix 5
AA5
A
58 61Right-handed 310
Helix 6
AA6
A
71 73Right-handed 310
Helix 7
AA7
A
84 89Right-handed 310
Helix 8
AA8
A
93 105Right-handed alpha
Helix 9
AA9
A
133 135Right-handed 310
Helix 10
AB1
A
136 142Right-handed alpha
Helix 11
AB2
A
151 156Right-handed 310
Helix 12
AB3
B
32 39Right-handed alpha
Helix 13
AB4
B
41 52Right-handed alpha
Helix 14
AB5
B
55 64Right-handed alpha
Helix 15
AB6
B
66 77Right-handed alpha
Helix 16
AB7
B
81 103Right-handed alpha
Helix 17
AB8
B
104 113Right-handed alpha
Helix 18
AB9
B
116 120Right-handed 310
Helix 19
AC1
B
123 128Right-handed 310
Helix 20
AC2
B
130 147Right-handed alpha
Helix 21
AC3
C
23 27Right-handed 310
Helix 22
AC4
C
33 39Right-handed alpha
Helix 23
AC5
C
41 52Right-handed alpha
Helix 24
AC6
C
55 64Right-handed alpha
Helix 25
AC7
C
66 76Right-handed alpha
Helix 26
AC8
C
81 103Right-handed alpha
Helix 27
AC9
C
104 113Right-handed alpha
Helix 28
AD1
C
123 128Right-handed 310
Helix 29
AD2
C
130 146Right-handed alpha
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There are 2 sheets in PDB entry 8GUG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
144 146anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
125 129anti-parallel
Strand 3
A
113 117anti-parallel
Strand 4
A
75 77parallel
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