Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GUL entry

There are 2 chains in PDB entry 8GUL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 1	ASN 464
B	HIS 1	LEU 390

There are 16 helices in PDB entry 8GUL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	33	42	Right-handed 310
Helix 3	AA3	A	64	72	Right-handed 310
Helix 4	AA4	A	119	123	Right-handed 310
Helix 5	AA5	A	218	221	Right-handed 310
Helix 6	AA6	A	229	232	Right-handed 310
Helix 7	AA7	A	233	249	Right-handed alpha
Helix 8	AA8	A	409	413	Right-handed 310
Helix 9	AA9	A	433	440	Right-handed 310
Helix 10	AB1	A	455	459	Right-handed alpha
Helix 11	AB2	B	14	19	Right-handed alpha
Helix 12	AB3	B	33	42	Right-handed 310
Helix 13	AB4	B	64	72	Right-handed 310
Helix 14	AB5	B	119	123	Right-handed 310
Helix 15	AB6	B	218	221	Right-handed 310
Helix 16	AB7	B	233	249	Right-handed alpha

There are 18 sheets in PDB entry 8GUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	141	148	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	168	178	anti-parallel
Strand 3	A	81	83	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	168	178	anti-parallel
Strand 3	A	153	163	anti-parallel
Strand 4	A	100	107	anti-parallel
Strand 5	A	129	136	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	194	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	252	254	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	205	212	anti-parallel
Strand 3	A	223	225	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	205	212	anti-parallel
Strand 3	A	282	288	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	263	264	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	301	first strand
Strand 2	A	315	323	anti-parallel
Strand 3	A	352	358	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	380	391	parallel
Strand 3	A	365	375	anti-parallel
Strand 4	A	326	333	anti-parallel
Strand 5	A	339	345	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	405	first strand
Strand 2	A	418	420	parallel
Strand 3	A	426	429	anti-parallel
Strand 4	A	460	462	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	141	148	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	168	178	anti-parallel
Strand 3	B	81	82	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	168	178	anti-parallel
Strand 3	B	153	163	anti-parallel
Strand 4	B	100	107	anti-parallel
Strand 5	B	129	136	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	194	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	252	254	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	205	212	anti-parallel
Strand 3	B	223	225	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	205	212	anti-parallel
Strand 3	B	282	288	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	257	first strand
Strand 2	B	263	264	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	345	first strand
Strand 2	B	326	333	anti-parallel
Strand 3	B	365	375	anti-parallel
Strand 4	B	380	390	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GUL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUL