Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GUN entry

There are 2 chains in PDB entry 8GUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 444LYS 614
B
 SER 445LYS 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8GUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
510 515Right-handed alpha
Helix 2
AA2
A
516 520Right-handed 310
Helix 3
AA3
A
531 535Right-handed 310
Helix 4
AA4
A
548 552Right-handed alpha
Helix 5
AA5
A
558 573Right-handed alpha
Helix 6
AA6
B
511 515Right-handed alpha
Helix 7
AA7
B
516 520Right-handed 310
Helix 8
AA8
B
531 535Right-handed 310
Helix 9
AA9
B
548 552Right-handed alpha
Helix 10
AB1
B
558 573Right-handed alpha
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There are 6 sheets in PDB entry 8GUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
474 477parallel
Strand 3
A
483 486anti-parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
577 585anti-parallel
Strand 6
A
595 602anti-parallel
Strand 7
A
605 612anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
469 470anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 528first strand
Strand 2
A
543 547anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 455first strand
Strand 2
B
474 477parallel
Strand 3
B
483 486anti-parallel
Strand 4
B
492 499anti-parallel
Strand 5
B
577 585anti-parallel
Strand 6
B
595 602anti-parallel
Strand 7
B
605 612anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 464first strand
Strand 2
B
469 470anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 528first strand
Strand 2
B
543 547anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il