Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GUQ entry

There are 5 chains in PDB entry 8GUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	GLU 3	ASN 340
C	ALA 7	GLU 63
R	PRO 21	LYS 319
S	VAL 2	LEU 235

There are 31 helices in PDB entry 8GUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	32	Right-handed alpha
Helix 2	AA2	A	47	53	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed 310
Helix 4	AA4	A	228	231	Right-handed 310
Helix 5	AA5	A	241	255	Right-handed alpha
Helix 6	AA6	A	270	281	Right-handed alpha
Helix 7	AA7	A	282	286	Right-handed 310
Helix 8	AA8	A	295	308	Right-handed alpha
Helix 9	AA9	A	330	351	Right-handed alpha
Helix 10	AB1	B	4	8	Right-handed alpha
Helix 11	AB2	B	8	26	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	B	280	282	Right-handed 310
Helix 14	AB5	C	8	23	Right-handed alpha
Helix 15	AB6	C	29	34	Right-handed alpha
Helix 16	AB7	C	34	44	Right-handed alpha
Helix 17	AB8	C	45	48	Right-handed 310
Helix 18	AB9	R	32	62	Right-handed alpha
Helix 19	AC1	R	69	96	Right-handed alpha
Helix 20	AC2	R	105	117	Right-handed alpha
Helix 21	AC3	R	118	137	Right-handed alpha
Helix 22	AC4	R	140	145	Right-handed alpha
Helix 23	AC5	R	146	166	Right-handed alpha
Helix 24	AC6	R	187	224	Right-handed alpha
Helix 25	AC7	R	238	271	Right-handed alpha
Helix 26	AC8	R	276	285	Right-handed alpha
Helix 27	AC9	R	286	299	Right-handed alpha
Helix 28	AD1	R	303	317	Right-handed alpha
Helix 29	AD2	S	28	32	Right-handed 310
Helix 30	AD3	S	87	91	Right-handed 310
Helix 31	AD4	S	208	212	Right-handed 310

There are 12 sheets in PDB entry 8GUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	33	38	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	259	260	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	97	anti-parallel
Strand 4	S	35	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	177	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	143	148	first strand
Strand 2	S	199	204	anti-parallel
Strand 3	S	191	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUQ