Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GUY entry

There are 6 chains in PDB entry 8GUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	HIS 1	ASP 907
A	GLY 1	ASN 21
B	ASN 3	THR 27
C	GLY 1	ASN 21
D	ASN 3	THR 27
F	HIS 1	ASP 907

There are 35 helices in PDB entry 8GUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	17	23	Right-handed 310
Helix 2	AA2	E	127	131	Right-handed 310
Helix 3	AA3	E	132	137	Right-handed alpha
Helix 4	AA4	E	148	152	Right-handed 310
Helix 5	AA5	E	255	266	Right-handed alpha
Helix 6	AA6	E	323	328	Right-handed alpha
Helix 7	AA7	E	329	331	Right-handed 310
Helix 8	AA8	E	354	359	Right-handed alpha
Helix 9	AA9	E	413	417	Right-handed 310
Helix 10	AB1	E	435	444	Right-handed alpha
Helix 11	AB2	E	638	644	Right-handed 310
Helix 12	AB3	E	688	714	Right-handed alpha
Helix 13	AB4	E	809	813	Right-handed 310
Helix 14	AB5	E	862	870	Right-handed alpha
Helix 15	AB6	A	2	7	Right-handed alpha
Helix 16	AB7	A	12	17	Right-handed alpha
Helix 17	AB8	B	8	19	Right-handed alpha
Helix 18	AB9	C	2	7	Right-handed alpha
Helix 19	AC1	C	12	17	Right-handed alpha
Helix 20	AC2	D	7	9	Right-handed 310
Helix 21	AC3	D	10	19	Right-handed alpha
Helix 22	AC4	F	17	21	Right-handed 310
Helix 23	AC5	F	132	137	Right-handed alpha
Helix 24	AC6	F	148	152	Right-handed 310
Helix 25	AC7	F	255	266	Right-handed alpha
Helix 26	AC8	F	314	316	Right-handed 310
Helix 27	AC9	F	323	328	Right-handed alpha
Helix 28	AD1	F	329	331	Right-handed 310
Helix 29	AD2	F	354	359	Right-handed alpha
Helix 30	AD3	F	413	417	Right-handed 310
Helix 31	AD4	F	435	444	Right-handed alpha
Helix 32	AD5	F	638	644	Right-handed 310
Helix 33	AD6	F	688	714	Right-handed alpha
Helix 34	AD7	F	809	813	Right-handed 310
Helix 35	AD8	F	862	870	Right-handed alpha

There are 32 sheets in PDB entry 8GUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	26	29	parallel
Strand 3	E	56	57	parallel
Strand 4	E	81	82	parallel
Strand 5	E	111	112	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	32	38	parallel
Strand 3	E	60	66	parallel
Strand 4	E	93	96	parallel
Strand 5	E	117	120	parallel
Strand 6	E	144	145	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	216	first strand
Strand 2	E	225	227	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	248	first strand
Strand 2	E	252	254	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	280	first strand
Strand 2	E	283	285	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	294	first strand
Strand 2	E	301	303	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	312	first strand
Strand 2	E	335	336	parallel
Strand 3	E	363	364	parallel
Strand 4	E	387	388	parallel
Strand 5	E	420	421	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	321	first strand
Strand 2	E	339	342	parallel
Strand 3	E	368	371	parallel
Strand 4	E	400	403	parallel
Strand 5	E	426	429	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	472	473	first strand
Strand 2	E	582	583	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	475	480	first strand
Strand 2	E	485	489	anti-parallel
Strand 3	E	550	553	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	530	534	first strand
Strand 2	E	503	509	anti-parallel
Strand 3	E	561	567	anti-parallel
Strand 4	E	586	589	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	599	605	first strand
Strand 2	E	611	616	anti-parallel
Strand 3	E	767	770	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	759	762	first strand
Strand 2	E	627	631	anti-parallel
Strand 3	E	781	786	anti-parallel
Strand 4	E	800	801	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	819	822	first strand
Strand 2	E	828	831	anti-parallel
Strand 3	E	872	874	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	856	859	first strand
Strand 2	E	842	851	anti-parallel
Strand 3	E	881	890	anti-parallel
Strand 4	E	893	897	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	856	859	first strand
Strand 2	E	842	851	anti-parallel
Strand 3	E	881	890	anti-parallel
Strand 4	E	901	904	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	26	29	parallel
Strand 3	F	56	57	parallel
Strand 4	F	81	82	parallel
Strand 5	F	111	112	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	33	38	parallel
Strand 3	F	61	66	parallel
Strand 4	F	93	96	parallel
Strand 5	F	117	120	parallel
Strand 6	F	144	145	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	213	216	first strand
Strand 2	F	225	227	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	248	first strand
Strand 2	F	252	254	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	280	first strand
Strand 2	F	283	285	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	294	first strand
Strand 2	F	301	303	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	311	312	first strand
Strand 2	F	335	336	parallel
Strand 3	F	363	364	parallel
Strand 4	F	387	388	parallel
Strand 5	F	420	421	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	318	321	first strand
Strand 2	F	339	342	parallel
Strand 3	F	368	371	parallel
Strand 4	F	400	403	parallel
Strand 5	F	426	429	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	472	473	first strand
Strand 2	F	582	583	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	475	480	first strand
Strand 2	F	485	489	anti-parallel
Strand 3	F	550	553	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	530	534	first strand
Strand 2	F	503	509	anti-parallel
Strand 3	F	561	567	anti-parallel
Strand 4	F	586	589	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	599	605	first strand
Strand 2	F	611	616	anti-parallel
Strand 3	F	767	770	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	761	762	first strand
Strand 2	F	627	631	anti-parallel
Strand 3	F	781	786	anti-parallel
Strand 4	F	800	801	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	819	822	first strand
Strand 2	F	828	831	anti-parallel
Strand 3	F	872	874	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	857	859	first strand
Strand 2	F	842	851	anti-parallel
Strand 3	F	881	890	anti-parallel
Strand 4	F	893	897	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	857	859	first strand
Strand 2	F	842	851	anti-parallel
Strand 3	F	881	890	anti-parallel
Strand 4	F	901	904	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GUY