Analysis of interatomic Contacts of Structural Units in PDB entry:
8GV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GV3 entry

There are 2 chains in PDB entry 8GV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	GLU 374
B	ASN 2	GLU 374

There are 28 helices in PDB entry 8GV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	53	Right-handed alpha
Helix 2	AA2	A	113	120	Right-handed alpha
Helix 3	AA3	A	167	172	Right-handed 310
Helix 4	AA4	A	173	184	Right-handed alpha
Helix 5	AA5	A	200	214	Right-handed alpha
Helix 6	AA6	A	224	226	Right-handed 310
Helix 7	AA7	A	227	235	Right-handed alpha
Helix 8	AA8	A	241	245	Right-handed 310
Helix 9	AA9	A	248	258	Right-handed alpha
Helix 10	AB1	A	270	279	Right-handed alpha
Helix 11	AB2	A	303	309	Right-handed alpha
Helix 12	AB3	A	317	321	Right-handed 310
Helix 13	AB4	A	322	336	Right-handed alpha
Helix 14	AB5	A	353	364	Right-handed alpha
Helix 15	AB6	B	44	53	Right-handed alpha
Helix 16	AB7	B	113	120	Right-handed alpha
Helix 17	AB8	B	167	172	Right-handed 310
Helix 18	AB9	B	173	184	Right-handed alpha
Helix 19	AC1	B	200	214	Right-handed alpha
Helix 20	AC2	B	224	226	Right-handed 310
Helix 21	AC3	B	227	235	Right-handed alpha
Helix 22	AC4	B	241	245	Right-handed 310
Helix 23	AC5	B	248	258	Right-handed alpha
Helix 24	AC6	B	270	279	Right-handed alpha
Helix 25	AC7	B	303	309	Right-handed alpha
Helix 26	AC8	B	317	321	Right-handed 310
Helix 27	AC9	B	322	336	Right-handed alpha
Helix 28	AD1	B	353	364	Right-handed alpha

There are 9 sheets in PDB entry 8GV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	129	131	anti-parallel
Strand 4	A	134	136	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	152	first strand
Strand 2	A	33	42	anti-parallel
Strand 3	A	68	75	anti-parallel
Strand 4	A	87	90	anti-parallel
Strand 5	A	156	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	152	first strand
Strand 2	A	33	42	anti-parallel
Strand 3	A	368	372	anti-parallel
Strand 4	A	345	350	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	217	221	parallel
Strand 3	A	193	197	parallel
Strand 4	A	263	266	parallel
Strand 5	A	287	290	parallel
Strand 6	A	313	315	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	B	300	302	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	129	131	anti-parallel
Strand 4	B	134	136	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	33	42	anti-parallel
Strand 3	B	68	75	anti-parallel
Strand 4	B	87	90	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	152	first strand
Strand 2	B	33	42	anti-parallel
Strand 3	B	368	372	anti-parallel
Strand 4	B	345	350	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	217	221	parallel
Strand 3	B	193	197	parallel
Strand 4	B	263	266	parallel
Strand 5	B	287	290	parallel
Strand 6	B	313	315	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GV3