Analysis of interatomic Contacts of Structural Units in PDB entry:
8GV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GV5 entry

There are 4 chains in PDB entry 8GV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1SER 323
B
 GLY 331PRO 487
C
 GLN 31SER 154
D
 GLU 43LYS 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8GV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 63Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
97 105Right-handed alpha
Helix 4
AA4
A
187 192Right-handed alpha
Helix 5
AA5
B
364 385Right-handed alpha
Helix 6
AA6
B
401 451Right-handed alpha
Helix 7
AA7
B
474 479Right-handed alpha
Helix 8
AA8
C
58 62Right-handed 310
Helix 9
AA9
C
92 95Right-handed 310
Helix 10
AB1
C
117 121Right-handed 310
Helix 11
AB2
D
121 125Right-handed 310
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There are 14 sheets in PDB entry 8GV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 363first strand
Strand 2
B
349 354anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
B
464 466anti-parallel
Strand 5
B
458 460anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
24 25anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
313 315anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
79 81parallel
Strand 3
A
265 267parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
253 256anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
248 251anti-parallel
Strand 5
A
148 149anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
253 256anti-parallel
Strand 3
A
173 181anti-parallel
Strand 4
A
226 234anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
239 244anti-parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
207 210anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
279 280anti-parallel
Strand 3
A
300 302anti-parallel
Strand 4
B
390 392anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
305 306parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
C
48 55anti-parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
98 103anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 42first strand
Strand 2
C
149 153parallel
Strand 3
C
122 129anti-parallel
Strand 4
C
64 69anti-parallel
Strand 5
C
75 81anti-parallel
Strand 6
C
88 90anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 42first strand
Strand 2
C
149 153parallel
Strand 3
C
122 129anti-parallel
Strand 4
C
142 145anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 55first strand
Strand 2
D
144 148parallel
Strand 3
D
127 132anti-parallel
Strand 4
D
75 80anti-parallel
Strand 5
D
87 91anti-parallel
Strand 6
D
95 96anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 66first strand
Strand 2
D
112 117anti-parallel
Strand 3
D
104 109anti-parallel
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