Analysis of interatomic Contacts of Structural Units in PDB entry:
8GV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GV8 entry

There are 2 chains in PDB entry 8GV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 673PRO 1223
B
 ASP 673PRO 1223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8GV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
682 693Right-handed alpha
Helix 2
AA2
A
696 703Right-handed alpha
Helix 3
AA3
A
705 734Right-handed alpha
Helix 4
AA4
A
768 785Right-handed alpha
Helix 5
AA5
A
788 810Right-handed alpha
Helix 6
AA6
A
811 819Right-handed 310
Helix 7
AA7
A
825 847Right-handed alpha
Helix 8
AA8
A
899 923Right-handed alpha
Helix 9
AA9
A
928 938Right-handed alpha
Helix 10
AB1
A
938 954Right-handed alpha
Helix 11
AB2
A
990 997Right-handed alpha
Helix 12
AB3
A
997 1020Right-handed alpha
Helix 13
AB4
A
1038 1047Right-handed alpha
Helix 14
AB5
A
1057 1067Right-handed alpha
Helix 15
AB6
A
1091 1102Right-handed alpha
Helix 16
AB7
A
1109 1113Right-handed 310
Helix 17
AB8
A
1114 1129Right-handed alpha
Helix 18
AB9
A
1133 1144Right-handed alpha
Helix 19
AC1
A
1145 1149Right-handed 310
Helix 20
AC2
A
1152 1157Right-handed alpha
Helix 21
AC3
A
1159 1182Right-handed alpha
Helix 22
AC4
A
1188 1195Right-handed alpha
Helix 23
AC5
A
1195 1208Right-handed alpha
Helix 24
AC6
A
1209 1217Right-handed alpha
Helix 25
AC7
B
682 693Right-handed alpha
Helix 26
AC8
B
696 703Right-handed alpha
Helix 27
AC9
B
705 734Right-handed alpha
Helix 28
AD1
B
739 758Right-handed alpha
Helix 29
AD2
B
768 785Right-handed alpha
Helix 30
AD3
B
788 810Right-handed alpha
Helix 31
AD4
B
812 819Right-handed 310
Helix 32
AD5
B
829 834Right-handed alpha
Helix 33
AD6
B
899 923Right-handed alpha
Helix 34
AD7
B
928 938Right-handed alpha
Helix 35
AD8
B
938 954Right-handed alpha
Helix 36
AD9
B
990 997Right-handed alpha
Helix 37
AE1
B
997 1020Right-handed alpha
Helix 38
AE2
B
1035 1047Right-handed alpha
Helix 39
AE3
B
1057 1067Right-handed alpha
Helix 40
AE4
B
1091 1102Right-handed alpha
Helix 41
AE5
B
1103 1105Right-handed 310
Helix 42
AE6
B
1109 1113Right-handed 310
Helix 43
AE7
B
1114 1129Right-handed alpha
Helix 44
AE8
B
1133 1144Right-handed alpha
Helix 45
AE9
B
1145 1149Right-handed 310
Helix 46
AF1
B
1152 1157Right-handed alpha
Helix 47
AF2
B
1159 1183Right-handed alpha
Helix 48
AF3
B
1188 1195Right-handed alpha
Helix 49
AF4
B
1195 1208Right-handed alpha
Helix 50
AF5
B
1209 1217Right-handed alpha
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There are 4 sheets in PDB entry 8GV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
1055 1056anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1071first strand
Strand 2
A
1083 1085anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 766first strand
Strand 2
B
1055 1056anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1070 1071first strand
Strand 2
B
1083 1085anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il