Analysis of interatomic Contacts of Structural Units in PDB entry:
8GV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GV9 entry

There are 2 chains in PDB entry 8GV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 320ASN 1219
B
 PRO 320ASN 1219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8GV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
370 381Right-handed alpha
Helix 2
AA2
A
393 407Right-handed alpha
Helix 3
AA3
A
412 414Right-handed 310
Helix 4
AA4
A
415 424Right-handed alpha
Helix 5
AA5
A
500 510Right-handed alpha
Helix 6
AA6
A
568 580Right-handed alpha
Helix 7
AA7
A
582 591Right-handed alpha
Helix 8
AA8
A
594 607Right-handed alpha
Helix 9
AA9
A
621 641Right-handed alpha
Helix 10
AB1
A
682 693Right-handed alpha
Helix 11
AB2
A
694 696Right-handed 310
Helix 12
AB3
A
697 702Right-handed alpha
Helix 13
AB4
A
705 734Right-handed alpha
Helix 14
AB5
A
739 758Right-handed alpha
Helix 15
AB6
A
768 785Right-handed alpha
Helix 16
AB7
A
788 810Right-handed alpha
Helix 17
AB8
A
811 819Right-handed 310
Helix 18
AB9
A
820 850Right-handed alpha
Helix 19
AC1
A
899 923Right-handed alpha
Helix 20
AC2
A
928 937Right-handed alpha
Helix 21
AC3
A
938 954Right-handed alpha
Helix 22
AC4
A
990 996Right-handed alpha
Helix 23
AC5
A
999 1020Right-handed alpha
Helix 24
AC6
A
1031 1046Right-handed alpha
Helix 25
AC7
A
1057 1067Right-handed alpha
Helix 26
AC8
A
1091 1102Right-handed alpha
Helix 27
AC9
A
1106 1111Right-handed alpha
Helix 28
AD1
A
1114 1129Right-handed alpha
Helix 29
AD2
A
1133 1141Right-handed alpha
Helix 30
AD3
A
1142 1144Right-handed 310
Helix 31
AD4
A
1145 1149Right-handed 310
Helix 32
AD5
A
1152 1157Right-handed alpha
Helix 33
AD6
A
1159 1183Right-handed alpha
Helix 34
AD7
A
1185 1187Right-handed 310
Helix 35
AD8
A
1188 1195Right-handed alpha
Helix 36
AD9
A
1195 1208Right-handed alpha
Helix 37
AE1
B
370 381Right-handed alpha
Helix 38
AE2
B
393 408Right-handed alpha
Helix 39
AE3
B
415 424Right-handed alpha
Helix 40
AE4
B
500 510Right-handed alpha
Helix 41
AE5
B
568 580Right-handed alpha
Helix 42
AE6
B
582 591Right-handed alpha
Helix 43
AE7
B
596 607Right-handed alpha
Helix 44
AE8
B
625 641Right-handed alpha
Helix 45
AE9
B
682 693Right-handed alpha
Helix 46
AF1
B
695 700Right-handed alpha
Helix 47
AF2
B
705 734Right-handed alpha
Helix 48
AF3
B
739 758Right-handed alpha
Helix 49
AF4
B
768 784Right-handed alpha
Helix 50
AF5
B
788 810Right-handed alpha
Helix 51
AF6
B
812 819Right-handed 310
Helix 52
AF7
B
820 850Right-handed alpha
Helix 53
AF8
B
899 923Right-handed alpha
Helix 54
AF9
B
928 937Right-handed alpha
Helix 55
AG1
B
938 954Right-handed alpha
Helix 56
AG2
B
997 1020Right-handed alpha
Helix 57
AG3
B
1033 1047Right-handed alpha
Helix 58
AG4
B
1048 1050Right-handed 310
Helix 59
AG5
B
1057 1067Right-handed alpha
Helix 60
AG6
B
1091 1102Right-handed alpha
Helix 61
AG7
B
1109 1113Right-handed 310
Helix 62
AG8
B
1114 1129Right-handed alpha
Helix 63
AG9
B
1135 1141Right-handed alpha
Helix 64
AH1
B
1145 1149Right-handed 310
Helix 65
AH2
B
1152 1157Right-handed alpha
Helix 66
AH3
B
1159 1182Right-handed alpha
Helix 67
AH4
B
1188 1208Right-handed alpha
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There are 7 sheets in PDB entry 8GV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
340 346anti-parallel
Strand 3
A
322 330anti-parallel
Strand 4
A
514 523parallel
Strand 5
A
553 561parallel
Strand 6
A
531 541anti-parallel
Strand 7
A
384 389parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
340 346anti-parallel
Strand 3
A
427 428parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
B
610 612anti-parallel
Strand 3
A
610 612anti-parallel
Strand 4
B
368 369anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1083 1086anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
340 346anti-parallel
Strand 3
B
323 330anti-parallel
Strand 4
B
515 523parallel
Strand 5
B
553 561parallel
Strand 6
B
531 541anti-parallel
Strand 7
B
384 389parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
340 346anti-parallel
Strand 3
B
427 428parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1069 1071first strand
Strand 2
B
1083 1086anti-parallel
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