Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GVB entry

There are 5 chains in PDB entry 8GVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ASP 200
B
 GLY 4ALA 245
H
 SER 2TRP 274
L
 ILE 1MET 99
P
 ARG 1TRP 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8GVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 87Right-handed 310
Helix 2
AA2
A
97 100Right-handed 310
Helix 3
AA3
B
84 88Right-handed 310
Helix 4
AA4
B
133 141Right-handed alpha
Helix 5
AA5
B
200 204Right-handed alpha
Helix 6
AA6
H
50 55Right-handed 310
Helix 7
AA7
H
56 86Right-handed alpha
Helix 8
AA8
H
137 150Right-handed alpha
Helix 9
AA9
H
151 162Right-handed alpha
Helix 10
AB1
H
162 175Right-handed alpha
Helix 11
AB2
H
253 255Right-handed 310
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There are 19 sheets in PDB entry 8GVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
109 114parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
45 51anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
109 114parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
103 105anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
57 59anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
178 179anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
172 176anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
76 80anti-parallel
Strand 4
B
66 69anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
111 116parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
44 50anti-parallel
Strand 6
B
55 58anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
111 116parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
106 107anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 130first strand
Strand 2
B
142 152anti-parallel
Strand 3
B
190 199anti-parallel
Strand 4
B
172 174anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 130first strand
Strand 2
B
142 152anti-parallel
Strand 3
B
190 199anti-parallel
Strand 4
B
179 180anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
157 163anti-parallel
Strand 3
B
209 216anti-parallel
Strand 4
B
235 242anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
31 37anti-parallel
Strand 3
H
21 28anti-parallel
Strand 4
H
3 12anti-parallel
Strand 5
H
101 103anti-parallel
Strand 6
H
109 112anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
31 37anti-parallel
Strand 3
H
21 28anti-parallel
Strand 4
H
3 12anti-parallel
Strand 5
H
94 98anti-parallel
Strand 6
H
115 118anti-parallel
Strand 7
H
121 126anti-parallel
Strand 8
H
133 135anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
186 189first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
228 230anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
192 193first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
234 235anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
222 223first strand
Strand 2
H
213 219anti-parallel
Strand 3
H
257 263anti-parallel
Strand 4
H
270 273anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 11first strand
Strand 2
L
21 30anti-parallel
Strand 3
L
62 70anti-parallel
Strand 4
L
50 51anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 11first strand
Strand 2
L
21 30anti-parallel
Strand 3
L
62 70anti-parallel
Strand 4
L
55 56anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
44 45first strand
Strand 2
L
36 41anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
91 94anti-parallel
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