Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GVE entry

There are 2 chains in PDB entry 8GVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 673GLU 1220
A
 ASP 673ASN 1219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 8GVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
682 693Right-handed alpha
Helix 2
AA2
B
696 702Right-handed alpha
Helix 3
AA3
B
705 734Right-handed alpha
Helix 4
AA4
B
739 758Right-handed alpha
Helix 5
AA5
B
768 785Right-handed alpha
Helix 6
AA6
B
789 810Right-handed alpha
Helix 7
AA7
B
811 819Right-handed 310
Helix 8
AA8
B
820 848Right-handed alpha
Helix 9
AA9
B
900 923Right-handed alpha
Helix 10
AB1
B
928 938Right-handed alpha
Helix 11
AB2
B
938 954Right-handed alpha
Helix 12
AB3
B
990 997Right-handed alpha
Helix 13
AB4
B
997 1020Right-handed alpha
Helix 14
AB5
B
1035 1047Right-handed alpha
Helix 15
AB6
B
1048 1050Right-handed 310
Helix 16
AB7
B
1057 1067Right-handed alpha
Helix 17
AB8
B
1090 1102Right-handed alpha
Helix 18
AB9
B
1109 1113Right-handed 310
Helix 19
AC1
B
1114 1129Right-handed alpha
Helix 20
AC2
B
1133 1144Right-handed alpha
Helix 21
AC3
B
1145 1149Right-handed 310
Helix 22
AC4
B
1152 1157Right-handed alpha
Helix 23
AC5
B
1160 1183Right-handed alpha
Helix 24
AC6
B
1188 1195Right-handed alpha
Helix 25
AC7
B
1195 1208Right-handed alpha
Helix 26
AC8
B
1209 1217Right-handed alpha
Helix 27
AC9
A
682 690Right-handed alpha
Helix 28
AD1
A
692 694Right-handed 310
Helix 29
AD2
A
695 702Right-handed alpha
Helix 30
AD3
A
706 735Right-handed alpha
Helix 31
AD4
A
740 757Right-handed alpha
Helix 32
AD5
A
768 785Right-handed alpha
Helix 33
AD6
A
788 811Right-handed alpha
Helix 34
AD7
A
812 819Right-handed 310
Helix 35
AD8
A
820 845Right-handed alpha
Helix 36
AD9
A
845 850Right-handed alpha
Helix 37
AE1
A
899 923Right-handed alpha
Helix 38
AE2
A
929 938Right-handed alpha
Helix 39
AE3
A
939 954Right-handed alpha
Helix 40
AE4
A
990 994Right-handed 310
Helix 41
AE5
A
998 1020Right-handed alpha
Helix 42
AE6
A
1033 1047Right-handed alpha
Helix 43
AE7
A
1048 1050Right-handed 310
Helix 44
AE8
A
1058 1068Right-handed alpha
Helix 45
AE9
A
1093 1102Right-handed alpha
Helix 46
AF1
A
1106 1111Right-handed alpha
Helix 47
AF2
A
1114 1129Right-handed alpha
Helix 48
AF3
A
1133 1142Right-handed alpha
Helix 49
AF4
A
1143 1144Right-handed 310
Helix 50
AF5
A
1145 1149Right-handed 310
Helix 51
AF6
A
1152 1157Right-handed alpha
Helix 52
AF7
A
1159 1183Right-handed alpha
Helix 53
AF8
A
1188 1208Right-handed alpha
Helix 54
AF9
A
1211 1216Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8GVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 766first strand
Strand 2
B
1055 1056anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1070 1071first strand
Strand 2
B
1083 1085anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
1055 1057anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il