Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GVF entry

There are 2 chains in PDB entry 8GVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 673GLU 1220
B
 ASP 673GLU 1220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8GVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
682 693Right-handed alpha
Helix 2
AA2
A
696 702Right-handed alpha
Helix 3
AA3
A
705 734Right-handed alpha
Helix 4
AA4
A
740 758Right-handed alpha
Helix 5
AA5
A
768 784Right-handed alpha
Helix 6
AA6
A
791 810Right-handed alpha
Helix 7
AA7
A
811 818Right-handed 310
Helix 8
AA8
A
820 850Right-handed alpha
Helix 9
AA9
A
900 921Right-handed alpha
Helix 10
AB1
A
922 924Right-handed 310
Helix 11
AB2
A
928 938Right-handed alpha
Helix 12
AB3
A
938 954Right-handed alpha
Helix 13
AB4
A
972 976Right-handed 310
Helix 14
AB5
A
990 997Right-handed alpha
Helix 15
AB6
A
997 1020Right-handed alpha
Helix 16
AB7
A
1033 1047Right-handed alpha
Helix 17
AB8
A
1048 1050Right-handed 310
Helix 18
AB9
A
1057 1066Right-handed alpha
Helix 19
AC1
A
1091 1102Right-handed alpha
Helix 20
AC2
A
1109 1113Right-handed 310
Helix 21
AC3
A
1114 1129Right-handed alpha
Helix 22
AC4
A
1133 1141Right-handed alpha
Helix 23
AC5
A
1145 1149Right-handed 310
Helix 24
AC6
A
1152 1157Right-handed alpha
Helix 25
AC7
A
1159 1183Right-handed alpha
Helix 26
AC8
A
1185 1187Right-handed 310
Helix 27
AC9
A
1188 1195Right-handed alpha
Helix 28
AD1
A
1195 1208Right-handed alpha
Helix 29
AD2
A
1209 1217Right-handed alpha
Helix 30
AD3
B
682 693Right-handed alpha
Helix 31
AD4
B
696 702Right-handed alpha
Helix 32
AD5
B
705 734Right-handed alpha
Helix 33
AD6
B
740 758Right-handed alpha
Helix 34
AD7
B
768 786Right-handed alpha
Helix 35
AD8
B
788 810Right-handed alpha
Helix 36
AD9
B
811 818Right-handed 310
Helix 37
AE1
B
820 850Right-handed alpha
Helix 38
AE2
B
900 921Right-handed alpha
Helix 39
AE3
B
922 924Right-handed 310
Helix 40
AE4
B
928 938Right-handed alpha
Helix 41
AE5
B
938 954Right-handed alpha
Helix 42
AE6
B
972 976Right-handed 310
Helix 43
AE7
B
990 997Right-handed alpha
Helix 44
AE8
B
997 1020Right-handed alpha
Helix 45
AE9
B
1033 1047Right-handed alpha
Helix 46
AF1
B
1048 1050Right-handed 310
Helix 47
AF2
B
1058 1066Right-handed alpha
Helix 48
AF3
B
1091 1102Right-handed alpha
Helix 49
AF4
B
1109 1113Right-handed 310
Helix 50
AF5
B
1114 1129Right-handed alpha
Helix 51
AF6
B
1133 1141Right-handed alpha
Helix 52
AF7
B
1145 1149Right-handed 310
Helix 53
AF8
B
1152 1157Right-handed alpha
Helix 54
AF9
B
1159 1183Right-handed alpha
Helix 55
AG1
B
1185 1187Right-handed 310
Helix 56
AG2
B
1188 1195Right-handed alpha
Helix 57
AG3
B
1195 1208Right-handed alpha
Helix 58
AG4
B
1209 1217Right-handed alpha
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There are 4 sheets in PDB entry 8GVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
1055 1056anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1071first strand
Strand 2
A
1083 1085anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 766first strand
Strand 2
B
1055 1056anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1070 1071first strand
Strand 2
B
1083 1085anti-parallel
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