Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GVH entry

There are 2 chains in PDB entry 8GVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 320VAL 1241
B
 PRO 320VAL 1241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 8GVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
370 380Right-handed alpha
Helix 2
AA2
A
393 408Right-handed alpha
Helix 3
AA3
A
412 416Right-handed 310
Helix 4
AA4
A
418 424Right-handed alpha
Helix 5
AA5
A
500 510Right-handed alpha
Helix 6
AA6
A
568 581Right-handed alpha
Helix 7
AA7
A
582 590Right-handed alpha
Helix 8
AA8
A
594 607Right-handed alpha
Helix 9
AA9
A
619 623Right-handed 310
Helix 10
AB1
A
625 642Right-handed alpha
Helix 11
AB2
A
682 693Right-handed alpha
Helix 12
AB3
A
694 696Right-handed 310
Helix 13
AB4
A
705 734Right-handed alpha
Helix 14
AB5
A
739 758Right-handed alpha
Helix 15
AB6
A
768 785Right-handed alpha
Helix 16
AB7
A
788 810Right-handed alpha
Helix 17
AB8
A
811 819Right-handed 310
Helix 18
AB9
A
820 850Right-handed alpha
Helix 19
AC1
A
899 923Right-handed alpha
Helix 20
AC2
A
928 935Right-handed alpha
Helix 21
AC3
A
939 954Right-handed alpha
Helix 22
AC4
A
990 994Right-handed 310
Helix 23
AC5
A
997 1020Right-handed alpha
Helix 24
AC6
A
1031 1047Right-handed alpha
Helix 25
AC7
A
1048 1050Right-handed 310
Helix 26
AC8
A
1057 1068Right-handed alpha
Helix 27
AC9
A
1091 1103Right-handed alpha
Helix 28
AD1
A
1106 1111Right-handed alpha
Helix 29
AD2
A
1116 1129Right-handed alpha
Helix 30
AD3
A
1135 1141Right-handed alpha
Helix 31
AD4
A
1142 1144Right-handed 310
Helix 32
AD5
A
1145 1149Right-handed 310
Helix 33
AD6
A
1152 1157Right-handed alpha
Helix 34
AD7
A
1159 1182Right-handed alpha
Helix 35
AD8
A
1188 1195Right-handed alpha
Helix 36
AD9
A
1196 1202Right-handed alpha
Helix 37
AE1
A
1202 1208Right-handed alpha
Helix 38
AE2
A
1209 1217Right-handed alpha
Helix 39
AE3
A
1232 1236Right-handed 310
Helix 40
AE4
B
370 380Right-handed alpha
Helix 41
AE5
B
393 408Right-handed alpha
Helix 42
AE6
B
417 424Right-handed alpha
Helix 43
AE7
B
501 510Right-handed alpha
Helix 44
AE8
B
568 581Right-handed alpha
Helix 45
AE9
B
582 590Right-handed alpha
Helix 46
AF1
B
594 607Right-handed alpha
Helix 47
AF2
B
620 642Right-handed alpha
Helix 48
AF3
B
682 693Right-handed alpha
Helix 49
AF4
B
696 702Right-handed alpha
Helix 50
AF5
B
706 734Right-handed alpha
Helix 51
AF6
B
739 758Right-handed alpha
Helix 52
AF7
B
768 783Right-handed alpha
Helix 53
AF8
B
788 810Right-handed alpha
Helix 54
AF9
B
814 819Right-handed 310
Helix 55
AG1
B
825 850Right-handed alpha
Helix 56
AG2
B
899 923Right-handed alpha
Helix 57
AG3
B
930 935Right-handed alpha
Helix 58
AG4
B
939 954Right-handed alpha
Helix 59
AG5
B
992 997Right-handed alpha
Helix 60
AG6
B
997 1020Right-handed alpha
Helix 61
AG7
B
1033 1047Right-handed alpha
Helix 62
AG8
B
1048 1050Right-handed 310
Helix 63
AG9
B
1057 1068Right-handed alpha
Helix 64
AH1
B
1091 1103Right-handed alpha
Helix 65
AH2
B
1106 1111Right-handed alpha
Helix 66
AH3
B
1114 1129Right-handed alpha
Helix 67
AH4
B
1133 1141Right-handed alpha
Helix 68
AH5
B
1142 1144Right-handed 310
Helix 69
AH6
B
1145 1149Right-handed 310
Helix 70
AH7
B
1152 1157Right-handed alpha
Helix 71
AH8
B
1159 1182Right-handed alpha
Helix 72
AH9
B
1188 1208Right-handed alpha
Helix 73
AI1
B
1208 1213Right-handed alpha
Helix 74
AI2
B
1232 1237Right-handed alpha
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There are 5 sheets in PDB entry 8GVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
340 346anti-parallel
Strand 3
A
322 330anti-parallel
Strand 4
A
514 523parallel
Strand 5
A
553 561parallel
Strand 6
A
531 541anti-parallel
Strand 7
A
384 389parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
B
610 612anti-parallel
Strand 3
A
610 612anti-parallel
Strand 4
B
368 369anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1083 1086anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
341 346anti-parallel
Strand 3
B
322 330anti-parallel
Strand 4
B
514 523parallel
Strand 5
B
553 561parallel
Strand 6
B
531 541anti-parallel
Strand 7
B
384 389parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1069 1071first strand
Strand 2
B
1083 1086anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il