Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GVL entry

There are 2 chains in PDB entry 8GVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 24GLN 308
B
 SER 21GLN 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8GVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 56Right-handed alpha
Helix 2
AA2
A
83 92Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
113 130Right-handed alpha
Helix 5
AA5
A
136 153Right-handed alpha
Helix 6
AA6
A
156 167Right-handed alpha
Helix 7
AA7
A
177 195Right-handed alpha
Helix 8
AA8
A
199 212Right-handed alpha
Helix 9
AA9
A
286 308Right-handed alpha
Helix 10
AB1
B
44 57Right-handed alpha
Helix 11
AB2
B
60 62Right-handed 310
Helix 12
AB3
B
83 92Right-handed alpha
Helix 13
AB4
B
107 111Right-handed 310
Helix 14
AB5
B
113 130Right-handed alpha
Helix 15
AB6
B
136 153Right-handed alpha
Helix 16
AB7
B
154 158Right-handed 310
Helix 17
AB8
B
160 167Right-handed 310
Helix 18
AB9
B
177 195Right-handed alpha
Helix 19
AC1
B
199 212Right-handed alpha
Helix 20
AC2
B
286 307Right-handed alpha
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There are 5 sheets in PDB entry 8GVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
25 28anti-parallel
Strand 3
A
96 101parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
75 77anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
240 245anti-parallel
Strand 4
A
252 255anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 265first strand
Strand 2
A
268 273anti-parallel
Strand 3
A
280 283anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
23 28anti-parallel
Strand 3
B
96 101parallel
Strand 4
B
64 69anti-parallel
Strand 5
B
75 77anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 255first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
231 237anti-parallel
Strand 4
B
222 226anti-parallel
Strand 5
B
279 283anti-parallel
Strand 6
B
268 273anti-parallel
Strand 7
B
259 263anti-parallel
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