Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GVV entry

There is 1 chain in PDB entry 8GVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 878SER 1171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8GVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
879 893Right-handed alpha
Helix 2
AA2
A
895 902Right-handed alpha
Helix 3
AA3
A
918 925Right-handed 310
Helix 4
AA4
A
974 976Right-handed 310
Helix 5
AA5
A
977 988Right-handed alpha
Helix 6
AA6
A
1073 1094Right-handed alpha
Helix 7
AA7
A
1112 1128Right-handed alpha
Helix 8
AA8
A
1135 1145Right-handed alpha
Helix 9
AA9
A
1153 1170Right-handed alpha
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There are 2 sheets in PDB entry 8GVV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
953 960first strand
Strand 2
A
963 970anti-parallel
Strand 3
A
1104 1107parallel
Strand 4
A
992 995parallel
Strand 5
A
1054 1062parallel
Strand 6
A
1039 1048anti-parallel
Strand 7
A
1026 1035anti-parallel
Strand 8
A
1020 1023anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1000 1001first strand
Strand 2
A
1004 1005anti-parallel
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