Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GVX entry

There are 8 chains in PDB entry 8GVX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 17	LEU 761
F	GLU 33	LEU 348
E	GLU 33	LEU 348
G	GLU 33	LEU 348
H	GLU 33	LEU 348
A	ARG 17	LEU 761
C	ARG 17	LEU 761
D	ARG 17	LEU 761

There are216 helices in PDB entry 8GVX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	30	43	Right-handed alpha
Helix 2	AA2	B	44	59	Right-handed alpha
Helix 3	AA3	B	72	80	Right-handed alpha
Helix 4	AA4	B	82	92	Right-handed alpha
Helix 5	AA5	B	98	107	Right-handed alpha
Helix 6	AA6	B	108	119	Right-handed alpha
Helix 7	AA7	B	144	153	Right-handed alpha
Helix 8	AA8	B	154	163	Right-handed alpha
Helix 9	AA9	B	178	188	Right-handed alpha
Helix 10	AB1	B	188	204	Right-handed alpha
Helix 11	AB2	B	205	213	Right-handed alpha
Helix 12	AB3	B	215	234	Right-handed alpha
Helix 13	AB4	B	237	258	Right-handed alpha
Helix 14	AB5	B	261	270	Right-handed alpha
Helix 15	AB6	B	287	296	Right-handed alpha
Helix 16	AB7	B	298	303	Right-handed alpha
Helix 17	AB8	B	304	316	Right-handed alpha
Helix 18	AB9	B	326	339	Right-handed alpha
Helix 19	AC1	B	345	351	Right-handed alpha
Helix 20	AC2	B	356	361	Right-handed 310
Helix 21	AC3	B	362	384	Right-handed alpha
Helix 22	AC4	B	401	424	Right-handed alpha
Helix 23	AC5	B	426	431	Right-handed alpha
Helix 24	AC6	B	435	460	Right-handed alpha
Helix 25	AC7	B	465	469	Right-handed 310
Helix 26	AC8	B	473	492	Right-handed alpha
Helix 27	AC9	B	493	499	Right-handed 310
Helix 28	AD1	B	503	540	Right-handed alpha
Helix 29	AD2	B	541	543	Right-handed 310
Helix 30	AD3	B	549	553	Right-handed 310
Helix 31	AD4	B	567	578	Right-handed alpha
Helix 32	AD5	B	585	589	Right-handed 310
Helix 33	AD6	B	594	615	Right-handed alpha
Helix 34	AD7	B	615	650	Right-handed alpha
Helix 35	AD8	B	707	731	Right-handed alpha
Helix 36	AD9	B	740	761	Right-handed alpha
Helix 37	AE1	F	45	58	Right-handed alpha
Helix 38	AE2	F	62	69	Right-handed alpha
Helix 39	AE3	F	69	92	Right-handed alpha
Helix 40	AE4	F	99	110	Right-handed alpha
Helix 41	AE5	F	123	132	Right-handed alpha
Helix 42	AE6	F	133	142	Right-handed alpha
Helix 43	AE7	F	143	146	Right-handed 310
Helix 44	AE8	F	151	158	Right-handed alpha
Helix 45	AE9	F	158	163	Right-handed alpha
Helix 46	AF1	F	170	176	Right-handed alpha
Helix 47	AF2	F	204	215	Right-handed 310
Helix 48	AF3	F	228	230	Right-handed 310
Helix 49	AF4	F	241	256	Right-handed alpha
Helix 50	AF5	F	257	260	Right-handed 310
Helix 51	AF6	F	270	279	Right-handed alpha
Helix 52	AF7	F	282	286	Right-handed 310
Helix 53	AF8	F	295	309	Right-handed alpha
Helix 54	AF9	F	328	347	Right-handed alpha
Helix 55	AG1	E	45	58	Right-handed alpha
Helix 56	AG2	E	62	69	Right-handed alpha
Helix 57	AG3	E	69	92	Right-handed alpha
Helix 58	AG4	E	99	110	Right-handed alpha
Helix 59	AG5	E	123	132	Right-handed alpha
Helix 60	AG6	E	133	142	Right-handed alpha
Helix 61	AG7	E	143	146	Right-handed 310
Helix 62	AG8	E	151	158	Right-handed alpha
Helix 63	AG9	E	158	163	Right-handed alpha
Helix 64	AH1	E	170	176	Right-handed alpha
Helix 65	AH2	E	204	215	Right-handed 310
Helix 66	AH3	E	228	230	Right-handed 310
Helix 67	AH4	E	241	256	Right-handed alpha
Helix 68	AH5	E	257	260	Right-handed 310
Helix 69	AH6	E	270	279	Right-handed alpha
Helix 70	AH7	E	282	286	Right-handed 310
Helix 71	AH8	E	295	309	Right-handed alpha
Helix 72	AH9	E	328	347	Right-handed alpha
Helix 73	AI1	G	45	58	Right-handed alpha
Helix 74	AI2	G	62	69	Right-handed alpha
Helix 75	AI3	G	69	92	Right-handed alpha
Helix 76	AI4	G	99	110	Right-handed alpha
Helix 77	AI5	G	123	132	Right-handed alpha
Helix 78	AI6	G	133	142	Right-handed alpha
Helix 79	AI7	G	143	146	Right-handed 310
Helix 80	AI8	G	151	158	Right-handed alpha
Helix 81	AI9	G	158	163	Right-handed alpha
Helix 82	AJ1	G	170	176	Right-handed alpha
Helix 83	AJ2	G	204	215	Right-handed 310
Helix 84	AJ3	G	228	230	Right-handed 310
Helix 85	AJ4	G	241	256	Right-handed alpha
Helix 86	AJ5	G	257	260	Right-handed 310
Helix 87	AJ6	G	270	279	Right-handed alpha
Helix 88	AJ7	G	282	286	Right-handed 310
Helix 89	AJ8	G	295	309	Right-handed alpha
Helix 90	AJ9	G	328	347	Right-handed alpha
Helix 91	AK1	H	45	58	Right-handed alpha
Helix 92	AK2	H	62	69	Right-handed alpha
Helix 93	AK3	H	69	92	Right-handed alpha
Helix 94	AK4	H	99	110	Right-handed alpha
Helix 95	AK5	H	123	132	Right-handed alpha
Helix 96	AK6	H	133	142	Right-handed alpha
Helix 97	AK7	H	143	146	Right-handed 310
Helix 98	AK8	H	151	158	Right-handed alpha
Helix 99	AK9	H	158	163	Right-handed alpha
Helix 100	AL1	H	170	176	Right-handed alpha
Helix 101	AL2	H	204	215	Right-handed 310
Helix 102	AL3	H	228	230	Right-handed 310
Helix 103	AL4	H	241	256	Right-handed alpha
Helix 104	AL5	H	257	260	Right-handed 310
Helix 105	AL6	H	270	279	Right-handed alpha
Helix 106	AL7	H	282	286	Right-handed 310
Helix 107	AL8	H	295	309	Right-handed alpha
Helix 108	AL9	H	328	347	Right-handed alpha
Helix 109	AM1	A	30	43	Right-handed alpha
Helix 110	AM2	A	44	59	Right-handed alpha
Helix 111	AM3	A	72	80	Right-handed alpha
Helix 112	AM4	A	82	92	Right-handed alpha
Helix 113	AM5	A	98	107	Right-handed alpha
Helix 114	AM6	A	108	119	Right-handed alpha
Helix 115	AM7	A	144	153	Right-handed alpha
Helix 116	AM8	A	154	163	Right-handed alpha
Helix 117	AM9	A	178	188	Right-handed alpha
Helix 118	AN1	A	188	204	Right-handed alpha
Helix 119	AN2	A	205	213	Right-handed alpha
Helix 120	AN3	A	215	234	Right-handed alpha
Helix 121	AN4	A	237	258	Right-handed alpha
Helix 122	AN5	A	261	270	Right-handed alpha
Helix 123	AN6	A	287	296	Right-handed alpha
Helix 124	AN7	A	298	303	Right-handed alpha
Helix 125	AN8	A	304	316	Right-handed alpha
Helix 126	AN9	A	326	339	Right-handed alpha
Helix 127	AO1	A	345	351	Right-handed alpha
Helix 128	AO2	A	356	361	Right-handed 310
Helix 129	AO3	A	362	384	Right-handed alpha
Helix 130	AO4	A	401	424	Right-handed alpha
Helix 131	AO5	A	426	431	Right-handed alpha
Helix 132	AO6	A	435	460	Right-handed alpha
Helix 133	AO7	A	465	469	Right-handed 310
Helix 134	AO8	A	473	492	Right-handed alpha
Helix 135	AO9	A	493	499	Right-handed 310
Helix 136	AP1	A	503	540	Right-handed alpha
Helix 137	AP2	A	541	543	Right-handed 310
Helix 138	AP3	A	549	553	Right-handed 310
Helix 139	AP4	A	567	578	Right-handed alpha
Helix 140	AP5	A	585	589	Right-handed 310
Helix 141	AP6	A	594	615	Right-handed alpha
Helix 142	AP7	A	615	650	Right-handed alpha
Helix 143	AP8	A	707	731	Right-handed alpha
Helix 144	AP9	A	740	761	Right-handed alpha
Helix 145	AQ1	C	30	43	Right-handed alpha
Helix 146	AQ2	C	44	59	Right-handed alpha
Helix 147	AQ3	C	72	80	Right-handed alpha
Helix 148	AQ4	C	82	92	Right-handed alpha
Helix 149	AQ5	C	98	107	Right-handed alpha
Helix 150	AQ6	C	108	119	Right-handed alpha
Helix 151	AQ7	C	144	153	Right-handed alpha
Helix 152	AQ8	C	154	163	Right-handed alpha
Helix 153	AQ9	C	178	188	Right-handed alpha
Helix 154	AR1	C	188	204	Right-handed alpha
Helix 155	AR2	C	205	213	Right-handed alpha
Helix 156	AR3	C	215	234	Right-handed alpha
Helix 157	AR4	C	237	258	Right-handed alpha
Helix 158	AR5	C	261	270	Right-handed alpha
Helix 159	AR6	C	287	296	Right-handed alpha
Helix 160	AR7	C	298	303	Right-handed alpha
Helix 161	AR8	C	304	316	Right-handed alpha
Helix 162	AR9	C	326	339	Right-handed alpha
Helix 163	AS1	C	345	351	Right-handed alpha
Helix 164	AS2	C	356	361	Right-handed 310
Helix 165	AS3	C	362	384	Right-handed alpha
Helix 166	AS4	C	401	424	Right-handed alpha
Helix 167	AS5	C	426	431	Right-handed alpha
Helix 168	AS6	C	435	460	Right-handed alpha
Helix 169	AS7	C	465	469	Right-handed 310
Helix 170	AS8	C	473	492	Right-handed alpha
Helix 171	AS9	C	493	499	Right-handed 310
Helix 172	AT1	C	503	540	Right-handed alpha
Helix 173	AT2	C	541	543	Right-handed 310
Helix 174	AT3	C	549	553	Right-handed 310
Helix 175	AT4	C	567	578	Right-handed alpha
Helix 176	AT5	C	585	589	Right-handed 310
Helix 177	AT6	C	594	615	Right-handed alpha
Helix 178	AT7	C	615	650	Right-handed alpha
Helix 179	AT8	C	707	731	Right-handed alpha
Helix 180	AT9	C	740	761	Right-handed alpha
Helix 181	AU1	D	30	43	Right-handed alpha
Helix 182	AU2	D	44	59	Right-handed alpha
Helix 183	AU3	D	72	80	Right-handed alpha
Helix 184	AU4	D	82	92	Right-handed alpha
Helix 185	AU5	D	98	107	Right-handed alpha
Helix 186	AU6	D	108	119	Right-handed alpha
Helix 187	AU7	D	144	153	Right-handed alpha
Helix 188	AU8	D	154	163	Right-handed alpha
Helix 189	AU9	D	178	188	Right-handed alpha
Helix 190	AV1	D	188	204	Right-handed alpha
Helix 191	AV2	D	205	213	Right-handed alpha
Helix 192	AV3	D	215	234	Right-handed alpha
Helix 193	AV4	D	237	258	Right-handed alpha
Helix 194	AV5	D	261	270	Right-handed alpha
Helix 195	AV6	D	287	296	Right-handed alpha
Helix 196	AV7	D	298	303	Right-handed alpha
Helix 197	AV8	D	304	316	Right-handed alpha
Helix 198	AV9	D	326	339	Right-handed alpha
Helix 199	AW1	D	345	351	Right-handed alpha
Helix 200	AW2	D	356	361	Right-handed 310
Helix 201	AW3	D	362	384	Right-handed alpha
Helix 202	AW4	D	401	424	Right-handed alpha
Helix 203	AW5	D	426	431	Right-handed alpha
Helix 204	AW6	D	435	460	Right-handed alpha
Helix 205	AW7	D	465	469	Right-handed 310
Helix 206	AW8	D	473	492	Right-handed alpha
Helix 207	AW9	D	493	499	Right-handed 310
Helix 208	AX1	D	503	540	Right-handed alpha
Helix 209	AX2	D	541	543	Right-handed 310
Helix 210	AX3	D	549	553	Right-handed 310
Helix 211	AX4	D	567	578	Right-handed alpha
Helix 212	AX5	D	585	589	Right-handed 310
Helix 213	AX6	D	594	615	Right-handed alpha
Helix 214	AX7	D	615	650	Right-handed alpha
Helix 215	AX8	D	707	731	Right-handed alpha
Helix 216	AX9	D	740	761	Right-handed alpha

There are 8 sheets in PDB entry 8GVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	C	167	168	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	A	18	19	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	191	first strand
Strand 2	F	194	201	anti-parallel
Strand 3	F	34	39	parallel
Strand 4	F	220	226	parallel
Strand 5	F	263	269	parallel
Strand 6	F	319	323	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	191	first strand
Strand 2	E	194	201	anti-parallel
Strand 3	E	34	39	parallel
Strand 4	E	220	226	parallel
Strand 5	E	263	269	parallel
Strand 6	E	319	323	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	184	191	first strand
Strand 2	G	194	201	anti-parallel
Strand 3	G	34	39	parallel
Strand 4	G	220	226	parallel
Strand 5	G	263	269	parallel
Strand 6	G	319	323	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	184	191	first strand
Strand 2	H	194	201	anti-parallel
Strand 3	H	34	39	parallel
Strand 4	H	220	226	parallel
Strand 5	H	263	269	parallel
Strand 6	H	319	323	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	D	18	19	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	D	167	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GVX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GVX