Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GWE entry

There are 10 chains in PDB entry 8GWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 931
B	PHE 6	VAL 195
C	SER 1	ASN 78
D	PHE 6	ASN 192
E	ALA 1	PRO 593
F	ALA 1	PRO 593
G	ASN 1	GLN 113
H	A 1	A 4
I	G 9	G 33
J	U 24	G 50

There are 91 helices in PDB entry 8GWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	12	Right-handed alpha
Helix 2	AA2	A	76	91	Right-handed alpha
Helix 3	AA3	A	123	133	Right-handed alpha
Helix 4	AA4	A	139	149	Right-handed alpha
Helix 5	AA5	A	153	159	Right-handed 310
Helix 6	AA6	A	170	176	Right-handed alpha
Helix 7	AA7	A	178	200	Right-handed alpha
Helix 8	AA8	A	206	210	Right-handed 310
Helix 9	AA9	A	234	242	Right-handed alpha
Helix 10	AB1	A	243	248	Right-handed alpha
Helix 11	AB2	A	251	256	Right-handed 310
Helix 12	AB3	A	275	287	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	303	318	Right-handed alpha
Helix 15	AB6	A	322	326	Right-handed 310
Helix 16	AB7	A	367	377	Right-handed alpha
Helix 17	AB8	A	377	384	Right-handed alpha
Helix 18	AB9	A	416	425	Right-handed alpha
Helix 19	AC1	A	448	454	Right-handed alpha
Helix 20	AC2	A	455	459	Right-handed 310
Helix 21	AC3	A	465	480	Right-handed alpha
Helix 22	AC4	A	505	509	Right-handed 310
Helix 23	AC5	A	511	519	Right-handed alpha
Helix 24	AC6	A	520	531	Right-handed alpha
Helix 25	AC7	A	561	580	Right-handed alpha
Helix 26	AC8	A	596	607	Right-handed alpha
Helix 27	AC9	A	627	639	Right-handed alpha
Helix 28	AD1	A	640	642	Right-handed 310
Helix 29	AD2	A	647	663	Right-handed alpha
Helix 30	AD3	A	686	709	Right-handed alpha
Helix 31	AD4	A	717	733	Right-handed alpha
Helix 32	AD5	A	738	752	Right-handed alpha
Helix 33	AD6	A	768	774	Right-handed alpha
Helix 34	AD7	A	778	791	Right-handed alpha
Helix 35	AD8	A	833	842	Right-handed alpha
Helix 36	AD9	A	846	850	Right-handed 310
Helix 37	AE1	A	851	855	Right-handed 310
Helix 38	AE2	A	856	866	Right-handed alpha
Helix 39	AE3	A	867	872	Right-handed 310
Helix 40	AE4	A	874	903	Right-handed alpha
Helix 41	AE5	A	912	917	Right-handed 310
Helix 42	AE6	A	918	923	Right-handed alpha
Helix 43	AE7	A	924	926	Right-handed 310
Helix 44	AE8	B	11	28	Right-handed alpha
Helix 45	AE9	B	31	96	Right-handed alpha
Helix 46	AF1	B	101	109	Right-handed alpha
Helix 47	AF2	B	119	125	Right-handed alpha
Helix 48	AF3	B	134	142	Right-handed alpha
Helix 49	AF4	B	168	172	Right-handed 310
Helix 50	AF5	B	176	180	Right-handed 310
Helix 51	AF6	C	3	20	Right-handed alpha
Helix 52	AF7	C	25	41	Right-handed alpha
Helix 53	AF8	C	46	61	Right-handed alpha
Helix 54	AF9	C	69	73	Right-handed 310
Helix 55	AG1	D	9	29	Right-handed alpha
Helix 56	AG2	D	31	80	Right-handed alpha
Helix 57	AG3	D	82	99	Right-handed alpha
Helix 58	AG4	D	100	113	Right-handed alpha
Helix 59	AG5	D	134	142	Right-handed alpha
Helix 60	AG6	D	168	172	Right-handed 310
Helix 61	AG7	E	26	36	Right-handed alpha
Helix 62	AG8	E	103	112	Right-handed alpha
Helix 63	AG9	E	116	124	Right-handed alpha
Helix 64	AH1	E	127	148	Right-handed alpha
Helix 65	AH2	E	264	273	Right-handed alpha
Helix 66	AH3	E	290	299	Right-handed alpha
Helix 67	AH4	E	314	325	Right-handed alpha
Helix 68	AH5	E	380	391	Right-handed alpha
Helix 69	AH6	E	418	422	Right-handed 310
Helix 70	AH7	E	423	432	Right-handed alpha
Helix 71	AH8	E	445	456	Right-handed alpha
Helix 72	AH9	E	489	494	Right-handed alpha
Helix 73	AI1	E	494	500	Right-handed alpha
Helix 74	AI2	E	505	509	Right-handed 310
Helix 75	AI3	E	515	526	Right-handed alpha
Helix 76	AI4	E	560	565	Right-handed alpha
Helix 77	AI5	F	26	36	Right-handed alpha
Helix 78	AI6	F	104	110	Right-handed alpha
Helix 79	AI7	F	116	125	Right-handed alpha
Helix 80	AI8	F	127	147	Right-handed alpha
Helix 81	AI9	F	265	275	Right-handed alpha
Helix 82	AJ1	F	290	299	Right-handed alpha
Helix 83	AJ2	F	310	325	Right-handed alpha
Helix 84	AJ3	F	326	328	Right-handed 310
Helix 85	AJ4	F	381	391	Right-handed alpha
Helix 86	AJ5	F	425	433	Right-handed alpha
Helix 87	AJ6	F	445	456	Right-handed alpha
Helix 88	AJ7	F	490	501	Right-handed alpha
Helix 89	AJ8	F	503	507	Right-handed 310
Helix 90	AJ9	F	516	523	Right-handed alpha
Helix 91	AK1	G	95	110	Right-handed alpha

There are 30 sheets in PDB entry 8GWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	54	58	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	110	119	anti-parallel
Strand 5	A	99	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	38	first strand
Strand 2	A	43	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	231	233	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	A	362	363	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	B	115	116	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	669	parallel
Strand 4	A	672	675	anti-parallel
Strand 5	A	397	400	anti-parallel
Strand 6	A	386	390	anti-parallel
Strand 7	B	127	132	parallel
Strand 8	B	184	190	anti-parallel
Strand 9	B	153	160	anti-parallel
Strand 10	B	146	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	843	844	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	758	first strand
Strand 2	A	761	767	anti-parallel
Strand 3	A	612	616	anti-parallel
Strand 4	A	800	802	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	822	first strand
Strand 2	A	825	831	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	184	190	anti-parallel
Strand 3	D	153	160	anti-parallel
Strand 4	D	146	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	11	12	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	14	16	anti-parallel
Strand 3	E	42	43	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	71	first strand
Strand 2	E	64	66	anti-parallel
Strand 3	E	81	82	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	154	first strand
Strand 2	E	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	187	first strand
Strand 2	E	192	198	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	332	first strand
Strand 2	E	355	357	parallel
Strand 3	E	304	307	parallel
Strand 4	E	370	373	parallel
Strand 5	E	395	398	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	481	482	first strand
Strand 2	E	487	488	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	511	512	first strand
Strand 2	E	530	531	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	544	546	first strand
Strand 2	E	572	574	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	42	43	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	70	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	88	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	154	first strand
Strand 2	F	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	187	first strand
Strand 2	F	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	202	first strand
Strand 2	F	210	211	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	305	first strand
Strand 2	F	370	373	parallel
Strand 3	F	395	398	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	331	first strand
Strand 2	F	355	356	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	472	473	first strand
Strand 2	F	588	589	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	17	first strand
Strand 2	G	53	57	anti-parallel
Strand 3	G	64	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	43	46	anti-parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	73	76	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWE