Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GWK entry

There are 9 chains in PDB entry 8GWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 931
B	PHE 6	ASN 192
C	LYS 2	ASP 77
D	PHE 6	ALA 191
I	G 11	G 35
J	A 100	G 125
E	VAL 2	PRO 593
F	VAL 2	PRO 593
G	ASN 1	GLN 113

There are100 helices in PDB entry 8GWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	13	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	77	91	Right-handed alpha
Helix 4	AA4	A	123	133	Right-handed alpha
Helix 5	AA5	A	139	149	Right-handed alpha
Helix 6	AA6	A	153	159	Right-handed 310
Helix 7	AA7	A	170	176	Right-handed alpha
Helix 8	AA8	A	178	200	Right-handed alpha
Helix 9	AA9	A	234	242	Right-handed alpha
Helix 10	AB1	A	243	248	Right-handed alpha
Helix 11	AB2	A	249	256	Right-handed 310
Helix 12	AB3	A	275	287	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	303	318	Right-handed alpha
Helix 15	AB6	A	367	377	Right-handed alpha
Helix 16	AB7	A	378	383	Right-handed alpha
Helix 17	AB8	A	416	425	Right-handed alpha
Helix 18	AB9	A	447	454	Right-handed alpha
Helix 19	AC1	A	455	459	Right-handed 310
Helix 20	AC2	A	465	479	Right-handed alpha
Helix 21	AC3	A	505	509	Right-handed 310
Helix 22	AC4	A	511	519	Right-handed alpha
Helix 23	AC5	A	520	531	Right-handed alpha
Helix 24	AC6	A	561	580	Right-handed alpha
Helix 25	AC7	A	596	607	Right-handed alpha
Helix 26	AC8	A	621	626	Right-handed alpha
Helix 27	AC9	A	627	640	Right-handed alpha
Helix 28	AD1	A	647	663	Right-handed alpha
Helix 29	AD2	A	686	709	Right-handed alpha
Helix 30	AD3	A	717	732	Right-handed alpha
Helix 31	AD4	A	738	752	Right-handed alpha
Helix 32	AD5	A	768	773	Right-handed alpha
Helix 33	AD6	A	778	791	Right-handed alpha
Helix 34	AD7	A	833	842	Right-handed alpha
Helix 35	AD8	A	846	855	Right-handed 310
Helix 36	AD9	A	856	866	Right-handed alpha
Helix 37	AE1	A	867	872	Right-handed 310
Helix 38	AE2	A	874	897	Right-handed alpha
Helix 39	AE3	A	911	917	Right-handed 310
Helix 40	AE4	A	918	923	Right-handed alpha
Helix 41	AE5	A	924	926	Right-handed 310
Helix 42	AE6	B	9	29	Right-handed alpha
Helix 43	AE7	B	31	41	Right-handed alpha
Helix 44	AE8	B	47	52	Right-handed alpha
Helix 45	AE9	B	58	95	Right-handed alpha
Helix 46	AF1	B	96	98	Right-handed 310
Helix 47	AF2	B	100	109	Right-handed alpha
Helix 48	AF3	B	119	125	Right-handed alpha
Helix 49	AF4	B	134	142	Right-handed alpha
Helix 50	AF5	B	176	180	Right-handed 310
Helix 51	AF6	C	3	20	Right-handed alpha
Helix 52	AF7	C	21	24	Right-handed 310
Helix 53	AF8	C	25	40	Right-handed alpha
Helix 54	AF9	C	46	62	Right-handed alpha
Helix 55	AG1	C	67	75	Right-handed alpha
Helix 56	AG2	D	10	29	Right-handed alpha
Helix 57	AG3	D	35	44	Right-handed alpha
Helix 58	AG4	D	54	80	Right-handed alpha
Helix 59	AG5	D	82	99	Right-handed alpha
Helix 60	AG6	D	100	113	Right-handed alpha
Helix 61	AG7	D	134	142	Right-handed alpha
Helix 62	AG8	D	168	172	Right-handed 310
Helix 63	AG9	D	176	180	Right-handed 310
Helix 64	AH1	E	26	36	Right-handed alpha
Helix 65	AH2	E	103	112	Right-handed alpha
Helix 66	AH3	E	116	124	Right-handed alpha
Helix 67	AH4	E	127	148	Right-handed alpha
Helix 68	AH5	E	259	261	Right-handed 310
Helix 69	AH6	E	262	275	Right-handed alpha
Helix 70	AH7	E	287	299	Right-handed alpha
Helix 71	AH8	E	310	320	Right-handed alpha
Helix 72	AH9	E	320	325	Right-handed alpha
Helix 73	AI1	E	326	330	Right-handed 310
Helix 74	AI2	E	380	391	Right-handed alpha
Helix 75	AI3	E	418	422	Right-handed 310
Helix 76	AI4	E	423	432	Right-handed alpha
Helix 77	AI5	E	447	456	Right-handed alpha
Helix 78	AI6	E	489	501	Right-handed alpha
Helix 79	AI7	E	502	507	Right-handed 310
Helix 80	AI8	E	515	527	Right-handed alpha
Helix 81	AI9	E	532	536	Right-handed 310
Helix 82	AJ1	E	561	566	Right-handed alpha
Helix 83	AJ2	F	26	37	Right-handed alpha
Helix 84	AJ3	F	72	76	Right-handed 310
Helix 85	AJ4	F	103	112	Right-handed alpha
Helix 86	AJ5	F	116	124	Right-handed alpha
Helix 87	AJ6	F	127	148	Right-handed alpha
Helix 88	AJ7	F	259	261	Right-handed 310
Helix 89	AJ8	F	262	275	Right-handed alpha
Helix 90	AJ9	F	287	299	Right-handed alpha
Helix 91	AK1	F	310	320	Right-handed alpha
Helix 92	AK2	F	320	325	Right-handed alpha
Helix 93	AK3	F	326	328	Right-handed 310
Helix 94	AK4	F	375	379	Right-handed 310
Helix 95	AK5	F	380	391	Right-handed alpha
Helix 96	AK6	F	423	429	Right-handed alpha
Helix 97	AK7	F	447	456	Right-handed alpha
Helix 98	AK8	F	489	501	Right-handed alpha
Helix 99	AK9	F	515	526	Right-handed alpha
Helix 100	AL1	G	95	110	Right-handed alpha

There are 31 sheets in PDB entry 8GWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	65	72	anti-parallel
Strand 4	A	110	119	anti-parallel
Strand 5	A	99	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	38	first strand
Strand 2	A	43	50	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	231	233	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	342	348	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	B	115	116	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	335	first strand
Strand 2	A	338	339	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	669	parallel
Strand 4	A	672	675	anti-parallel
Strand 5	A	397	400	anti-parallel
Strand 6	A	386	390	anti-parallel
Strand 7	B	127	132	parallel
Strand 8	B	184	190	anti-parallel
Strand 9	B	152	160	anti-parallel
Strand 10	B	146	149	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	669	parallel
Strand 4	A	672	675	anti-parallel
Strand 5	A	397	400	anti-parallel
Strand 6	A	386	390	anti-parallel
Strand 7	B	127	132	parallel
Strand 8	B	184	190	anti-parallel
Strand 9	B	152	160	anti-parallel
Strand 10	B	166	167	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	843	844	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	758	first strand
Strand 2	A	761	767	anti-parallel
Strand 3	A	612	616	anti-parallel
Strand 4	A	800	802	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	822	first strand
Strand 2	A	825	831	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	127	132	anti-parallel
Strand 3	D	184	190	anti-parallel
Strand 4	D	153	160	anti-parallel
Strand 5	D	146	148	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	127	132	anti-parallel
Strand 3	D	184	190	anti-parallel
Strand 4	D	153	160	anti-parallel
Strand 5	D	166	167	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	11	12	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	14	16	anti-parallel
Strand 3	E	42	43	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	71	first strand
Strand 2	E	64	65	anti-parallel
Strand 3	E	81	82	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	E	88	89	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	157	first strand
Strand 2	E	163	164	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	196	first strand
Strand 2	E	183	187	anti-parallel
Strand 3	E	224	226	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	201	first strand
Strand 2	E	210	211	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	278	first strand
Strand 2	E	395	398	parallel
Strand 3	E	370	373	parallel
Strand 4	E	304	307	parallel
Strand 5	E	356	357	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	511	512	first strand
Strand 2	E	543	547	parallel
Strand 3	E	571	576	parallel
Strand 4	E	472	475	parallel
Strand 5	E	588	589	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	42	43	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	71	first strand
Strand 2	F	64	65	anti-parallel
Strand 3	F	81	82	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	88	89	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	159	first strand
Strand 2	F	162	166	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	196	first strand
Strand 2	F	183	187	anti-parallel
Strand 3	F	224	226	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	210	212	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	332	first strand
Strand 2	F	355	357	parallel
Strand 3	F	304	306	parallel
Strand 4	F	370	373	parallel
Strand 5	F	395	398	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	470	475	first strand
Strand 2	F	571	576	parallel
Strand 3	F	545	547	parallel
Strand 4	F	511	512	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	41	first strand
Strand 2	G	26	33	anti-parallel
Strand 3	G	10	17	anti-parallel
Strand 4	G	53	57	anti-parallel
Strand 5	G	64	65	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	84	90	anti-parallel
Strand 3	G	73	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWK