Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GWM entry

There are 9 chains in PDB entry 8GWM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	LEU 931
B	PHE 6	ASN 192
C	LYS 2	GLU 73
D	PHE 6	ALA 191
E	VAL 2	PRO 593
F	VAL 2	PRO 593
G	ASN 1	GLN 113
I	G 11	G 35
J	A 100	G 125

There are106 helices in PDB entry 8GWM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	14	16	Right-handed 310
Helix 3	AA3	A	61	63	Right-handed 310
Helix 4	AA4	A	76	91	Right-handed alpha
Helix 5	AA5	A	123	133	Right-handed alpha
Helix 6	AA6	A	139	149	Right-handed alpha
Helix 7	AA7	A	153	159	Right-handed 310
Helix 8	AA8	A	170	176	Right-handed alpha
Helix 9	AA9	A	178	200	Right-handed alpha
Helix 10	AB1	A	234	248	Right-handed alpha
Helix 11	AB2	A	251	256	Right-handed 310
Helix 12	AB3	A	275	287	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	303	318	Right-handed alpha
Helix 15	AB6	A	322	326	Right-handed 310
Helix 16	AB7	A	367	377	Right-handed alpha
Helix 17	AB8	A	377	384	Right-handed alpha
Helix 18	AB9	A	416	425	Right-handed alpha
Helix 19	AC1	A	447	454	Right-handed alpha
Helix 20	AC2	A	455	459	Right-handed 310
Helix 21	AC3	A	465	479	Right-handed alpha
Helix 22	AC4	A	489	493	Right-handed 310
Helix 23	AC5	A	505	509	Right-handed 310
Helix 24	AC6	A	511	519	Right-handed alpha
Helix 25	AC7	A	520	531	Right-handed alpha
Helix 26	AC8	A	561	580	Right-handed alpha
Helix 27	AC9	A	596	607	Right-handed alpha
Helix 28	AD1	A	621	626	Right-handed alpha
Helix 29	AD2	A	627	640	Right-handed alpha
Helix 30	AD3	A	647	663	Right-handed alpha
Helix 31	AD4	A	686	709	Right-handed alpha
Helix 32	AD5	A	717	733	Right-handed alpha
Helix 33	AD6	A	738	752	Right-handed alpha
Helix 34	AD7	A	768	773	Right-handed alpha
Helix 35	AD8	A	778	791	Right-handed alpha
Helix 36	AD9	A	833	842	Right-handed alpha
Helix 37	AE1	A	851	855	Right-handed 310
Helix 38	AE2	A	856	867	Right-handed alpha
Helix 39	AE3	A	868	872	Right-handed 310
Helix 40	AE4	A	874	903	Right-handed alpha
Helix 41	AE5	A	912	917	Right-handed 310
Helix 42	AE6	A	918	923	Right-handed alpha
Helix 43	AE7	A	924	926	Right-handed 310
Helix 44	AE8	B	9	29	Right-handed alpha
Helix 45	AE9	B	32	45	Right-handed alpha
Helix 46	AF1	B	50	55	Right-handed alpha
Helix 47	AF2	B	55	96	Right-handed alpha
Helix 48	AF3	B	100	109	Right-handed alpha
Helix 49	AF4	B	119	125	Right-handed alpha
Helix 50	AF5	B	134	142	Right-handed alpha
Helix 51	AF6	B	176	180	Right-handed 310
Helix 52	AF7	C	3	20	Right-handed alpha
Helix 53	AF8	C	25	41	Right-handed alpha
Helix 54	AF9	C	46	62	Right-handed alpha
Helix 55	AG1	C	66	71	Right-handed alpha
Helix 56	AG2	D	10	29	Right-handed alpha
Helix 57	AG3	D	32	38	Right-handed alpha
Helix 58	AG4	D	44	49	Right-handed alpha
Helix 59	AG5	D	51	80	Right-handed alpha
Helix 60	AG6	D	82	99	Right-handed alpha
Helix 61	AG7	D	100	113	Right-handed alpha
Helix 62	AG8	D	134	141	Right-handed alpha
Helix 63	AG9	D	176	180	Right-handed 310
Helix 64	AH1	E	26	37	Right-handed alpha
Helix 65	AH2	E	103	112	Right-handed alpha
Helix 66	AH3	E	116	126	Right-handed alpha
Helix 67	AH4	E	127	147	Right-handed alpha
Helix 68	AH5	E	266	274	Right-handed alpha
Helix 69	AH6	E	289	295	Right-handed alpha
Helix 70	AH7	E	296	299	Right-handed 310
Helix 71	AH8	E	310	317	Right-handed alpha
Helix 72	AH9	E	359	363	Right-handed 310
Helix 73	AI1	E	380	391	Right-handed alpha
Helix 74	AI2	E	423	428	Right-handed alpha
Helix 75	AI3	E	445	449	Right-handed 310
Helix 76	AI4	E	450	455	Right-handed 310
Helix 77	AI5	E	490	502	Right-handed alpha
Helix 78	AI6	E	503	507	Right-handed 310
Helix 79	AI7	E	516	523	Right-handed alpha
Helix 80	AI8	E	532	536	Right-handed 310
Helix 81	AI9	E	552	557	Right-handed alpha
Helix 82	AJ1	E	557	566	Right-handed alpha
Helix 83	AJ2	E	579	585	Right-handed alpha
Helix 84	AJ3	F	26	37	Right-handed alpha
Helix 85	AJ4	F	72	76	Right-handed 310
Helix 86	AJ5	F	103	112	Right-handed alpha
Helix 87	AJ6	F	116	126	Right-handed alpha
Helix 88	AJ7	F	127	148	Right-handed alpha
Helix 89	AJ8	F	262	265	Right-handed 310
Helix 90	AJ9	F	266	273	Right-handed alpha
Helix 91	AK1	F	289	295	Right-handed alpha
Helix 92	AK2	F	310	319	Right-handed alpha
Helix 93	AK3	F	326	328	Right-handed 310
Helix 94	AK4	F	359	363	Right-handed 310
Helix 95	AK5	F	380	391	Right-handed alpha
Helix 96	AK6	F	424	428	Right-handed 310
Helix 97	AK7	F	445	449	Right-handed 310
Helix 98	AK8	F	450	455	Right-handed 310
Helix 99	AK9	F	489	502	Right-handed alpha
Helix 100	AL1	F	503	507	Right-handed 310
Helix 101	AL2	F	516	523	Right-handed alpha
Helix 102	AL3	F	532	536	Right-handed 310
Helix 103	AL4	F	552	557	Right-handed alpha
Helix 104	AL5	F	557	566	Right-handed alpha
Helix 105	AL6	F	579	585	Right-handed alpha
Helix 106	AL7	G	95	110	Right-handed alpha

There are 32 sheets in PDB entry 8GWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	65	74	anti-parallel
Strand 4	A	110	119	anti-parallel
Strand 5	A	98	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	38	first strand
Strand 2	A	43	50	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	231	233	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	342	348	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	B	115	116	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	335	first strand
Strand 2	A	338	339	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	669	parallel
Strand 4	A	672	675	anti-parallel
Strand 5	A	397	400	anti-parallel
Strand 6	A	386	390	anti-parallel
Strand 7	B	127	132	parallel
Strand 8	B	184	190	anti-parallel
Strand 9	B	152	160	anti-parallel
Strand 10	B	146	149	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	669	parallel
Strand 4	A	672	675	anti-parallel
Strand 5	A	397	400	anti-parallel
Strand 6	A	386	390	anti-parallel
Strand 7	B	127	132	parallel
Strand 8	B	184	190	anti-parallel
Strand 9	B	152	160	anti-parallel
Strand 10	B	166	167	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	843	844	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	758	first strand
Strand 2	A	761	767	anti-parallel
Strand 3	A	612	616	anti-parallel
Strand 4	A	800	802	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	822	first strand
Strand 2	A	825	831	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	184	190	anti-parallel
Strand 3	D	152	160	anti-parallel
Strand 4	D	146	149	anti-parallel
Strand 5	D	142	143	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	11	12	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	71	first strand
Strand 2	E	64	65	anti-parallel
Strand 3	E	81	82	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	E	88	89	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	224	225	anti-parallel
Strand 3	E	184	187	anti-parallel
Strand 4	E	192	196	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	209	212	anti-parallel
Strand 3	E	199	201	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	332	first strand
Strand 2	E	355	357	parallel
Strand 3	E	304	306	parallel
Strand 4	E	370	372	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	472	473	first strand
Strand 2	E	588	589	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	480	482	first strand
Strand 2	E	487	489	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	510	512	first strand
Strand 2	E	543	547	parallel
Strand 3	E	571	575	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	11	12	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	14	16	anti-parallel
Strand 3	F	42	43	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	70	71	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	88	89	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	224	225	anti-parallel
Strand 3	F	184	187	anti-parallel
Strand 4	F	192	196	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	209	212	anti-parallel
Strand 3	F	199	201	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	332	first strand
Strand 2	F	355	357	parallel
Strand 3	F	304	306	parallel
Strand 4	F	370	372	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	510	512	first strand
Strand 2	F	543	546	parallel
Strand 3	F	571	574	parallel
Strand 4	F	472	473	parallel
Strand 5	F	588	589	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	481	482	first strand
Strand 2	F	487	488	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	31	33	anti-parallel
Strand 3	G	40	41	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	53	57	anti-parallel
Strand 3	G	64	68	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	82	90	anti-parallel
Strand 3	G	73	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GWM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWM