Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GWN entry

There are 9 chains in PDB entry 8GWN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	THR 929
B	PHE 6	ASN 192
C	LYS 2	GLU 73
D	PHE 6	ALA 191
I	G 9	G 33
J	U 24	G 50
F	VAL 2	PRO 593
E	ALA 1	PRO 593
G	ASN 1	GLN 113

There are 88 helices in PDB entry 8GWN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	12	Right-handed alpha
Helix 2	AA2	A	60	64	Right-handed 310
Helix 3	AA3	A	77	91	Right-handed alpha
Helix 4	AA4	A	123	133	Right-handed alpha
Helix 5	AA5	A	139	149	Right-handed alpha
Helix 6	AA6	A	153	158	Right-handed 310
Helix 7	AA7	A	170	176	Right-handed alpha
Helix 8	AA8	A	178	200	Right-handed alpha
Helix 9	AA9	A	235	242	Right-handed alpha
Helix 10	AB1	A	243	247	Right-handed 310
Helix 11	AB2	A	251	255	Right-handed 310
Helix 12	AB3	A	277	286	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	304	317	Right-handed alpha
Helix 15	AB6	A	368	376	Right-handed alpha
Helix 16	AB7	A	377	384	Right-handed alpha
Helix 17	AB8	A	416	426	Right-handed alpha
Helix 18	AB9	A	448	454	Right-handed alpha
Helix 19	AC1	A	455	459	Right-handed 310
Helix 20	AC2	A	468	480	Right-handed alpha
Helix 21	AC3	A	503	507	Right-handed 310
Helix 22	AC4	A	511	518	Right-handed alpha
Helix 23	AC5	A	520	529	Right-handed alpha
Helix 24	AC6	A	561	580	Right-handed alpha
Helix 25	AC7	A	597	606	Right-handed alpha
Helix 26	AC8	A	627	639	Right-handed alpha
Helix 27	AC9	A	648	663	Right-handed alpha
Helix 28	AD1	A	686	709	Right-handed alpha
Helix 29	AD2	A	719	732	Right-handed alpha
Helix 30	AD3	A	738	752	Right-handed alpha
Helix 31	AD4	A	779	791	Right-handed alpha
Helix 32	AD5	A	833	842	Right-handed alpha
Helix 33	AD6	A	852	854	Right-handed 310
Helix 34	AD7	A	855	866	Right-handed alpha
Helix 35	AD8	A	874	903	Right-handed alpha
Helix 36	AD9	A	917	922	Right-handed alpha
Helix 37	AE1	A	923	926	Right-handed 310
Helix 38	AE2	B	11	29	Right-handed alpha
Helix 39	AE3	B	32	50	Right-handed alpha
Helix 40	AE4	B	51	95	Right-handed alpha
Helix 41	AE5	B	101	108	Right-handed alpha
Helix 42	AE6	B	116	118	Right-handed 310
Helix 43	AE7	B	119	125	Right-handed alpha
Helix 44	AE8	B	134	140	Right-handed alpha
Helix 45	AE9	B	176	180	Right-handed 310
Helix 46	AF1	C	3	19	Right-handed alpha
Helix 47	AF2	C	26	40	Right-handed alpha
Helix 48	AF3	C	46	61	Right-handed alpha
Helix 49	AF4	C	66	71	Right-handed alpha
Helix 50	AF5	D	9	29	Right-handed alpha
Helix 51	AF6	D	31	38	Right-handed alpha
Helix 52	AF7	D	42	50	Right-handed alpha
Helix 53	AF8	D	51	80	Right-handed alpha
Helix 54	AF9	D	82	99	Right-handed alpha
Helix 55	AG1	D	100	113	Right-handed alpha
Helix 56	AG2	D	134	141	Right-handed alpha
Helix 57	AG3	F	26	35	Right-handed alpha
Helix 58	AG4	F	103	111	Right-handed alpha
Helix 59	AG5	F	116	124	Right-handed alpha
Helix 60	AG6	F	127	147	Right-handed alpha
Helix 61	AG7	F	265	273	Right-handed alpha
Helix 62	AG8	F	290	299	Right-handed alpha
Helix 63	AG9	F	310	325	Right-handed alpha
Helix 64	AH1	F	380	391	Right-handed alpha
Helix 65	AH2	F	418	422	Right-handed 310
Helix 66	AH3	F	423	432	Right-handed alpha
Helix 67	AH4	F	447	454	Right-handed alpha
Helix 68	AH5	F	489	503	Right-handed alpha
Helix 69	AH6	F	515	527	Right-handed alpha
Helix 70	AH7	F	552	557	Right-handed alpha
Helix 71	AH8	F	561	566	Right-handed alpha
Helix 72	AH9	E	26	36	Right-handed alpha
Helix 73	AI1	E	103	112	Right-handed alpha
Helix 74	AI2	E	116	125	Right-handed alpha
Helix 75	AI3	E	127	147	Right-handed alpha
Helix 76	AI4	E	177	181	Right-handed 310
Helix 77	AI5	E	262	273	Right-handed alpha
Helix 78	AI6	E	287	299	Right-handed alpha
Helix 79	AI7	E	314	320	Right-handed alpha
Helix 80	AI8	E	320	325	Right-handed alpha
Helix 81	AI9	E	380	391	Right-handed alpha
Helix 82	AJ1	E	418	422	Right-handed 310
Helix 83	AJ2	E	423	432	Right-handed alpha
Helix 84	AJ3	E	446	456	Right-handed alpha
Helix 85	AJ4	E	489	501	Right-handed alpha
Helix 86	AJ5	E	503	507	Right-handed 310
Helix 87	AJ6	E	516	526	Right-handed alpha
Helix 88	AJ7	G	95	110	Right-handed alpha

There are 27 sheets in PDB entry 8GWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	47	48	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	231	233	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	345	347	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	332	335	anti-parallel
Strand 3	A	362	363	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	B	130	131	parallel
Strand 3	B	185	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	843	844	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	544	first strand
Strand 2	A	556	557	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	757	first strand
Strand 2	A	762	763	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	821	822	first strand
Strand 2	A	825	826	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	152	155	anti-parallel
Strand 3	B	189	191	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	188	189	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	146	149	anti-parallel
Strand 3	D	152	155	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	14	16	anti-parallel
Strand 3	F	42	43	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	71	72	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	157	first strand
Strand 2	F	163	165	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	185	first strand
Strand 2	F	224	226	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	277	279	first strand
Strand 2	F	396	398	parallel
Strand 3	F	372	373	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	332	first strand
Strand 2	F	355	357	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	481	482	first strand
Strand 2	F	487	488	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	511	512	first strand
Strand 2	F	544	547	parallel
Strand 3	F	572	575	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	24	25	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	71	first strand
Strand 2	E	64	66	anti-parallel
Strand 3	E	81	82	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	166	first strand
Strand 2	E	152	157	anti-parallel
Strand 3	E	223	226	anti-parallel
Strand 4	E	182	187	anti-parallel
Strand 5	E	192	198	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	279	first strand
Strand 2	E	396	398	parallel
Strand 3	E	370	373	parallel
Strand 4	E	304	307	parallel
Strand 5	E	355	357	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	530	532	first strand
Strand 2	E	511	513	parallel
Strand 3	E	543	547	parallel
Strand 4	E	571	575	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	35	first strand
Strand 2	G	38	46	anti-parallel
Strand 3	G	82	90	anti-parallel
Strand 4	G	74	79	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	57	first strand
Strand 2	G	64	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GWN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWN