Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GWO entry

There are 9 chains in PDB entry 8GWO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	THR 929
B	PHE 6	ASN 192
C	LYS 2	GLU 73
D	PHE 6	ALA 191
I	G 9	G 33
J	U 24	G 50
F	VAL 2	PRO 593
E	ALA 1	PRO 593
G	ASN 1	GLN 113

There are 93 helices in PDB entry 8GWO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	12	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	76	90	Right-handed alpha
Helix 4	AA4	A	123	133	Right-handed alpha
Helix 5	AA5	A	140	149	Right-handed alpha
Helix 6	AA6	A	153	159	Right-handed 310
Helix 7	AA7	A	170	176	Right-handed alpha
Helix 8	AA8	A	178	199	Right-handed alpha
Helix 9	AA9	A	235	242	Right-handed alpha
Helix 10	AB1	A	243	245	Right-handed 310
Helix 11	AB2	A	251	255	Right-handed 310
Helix 12	AB3	A	277	287	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	303	318	Right-handed alpha
Helix 15	AB6	A	322	326	Right-handed 310
Helix 16	AB7	A	368	376	Right-handed alpha
Helix 17	AB8	A	377	384	Right-handed alpha
Helix 18	AB9	A	416	426	Right-handed alpha
Helix 19	AC1	A	448	454	Right-handed alpha
Helix 20	AC2	A	455	459	Right-handed 310
Helix 21	AC3	A	468	480	Right-handed alpha
Helix 22	AC4	A	505	509	Right-handed 310
Helix 23	AC5	A	511	519	Right-handed alpha
Helix 24	AC6	A	520	532	Right-handed alpha
Helix 25	AC7	A	561	580	Right-handed alpha
Helix 26	AC8	A	596	606	Right-handed alpha
Helix 27	AC9	A	627	639	Right-handed alpha
Helix 28	AD1	A	647	663	Right-handed alpha
Helix 29	AD2	A	686	709	Right-handed alpha
Helix 30	AD3	A	711	715	Right-handed 310
Helix 31	AD4	A	719	733	Right-handed alpha
Helix 32	AD5	A	738	752	Right-handed alpha
Helix 33	AD6	A	767	772	Right-handed alpha
Helix 34	AD7	A	779	790	Right-handed alpha
Helix 35	AD8	A	833	842	Right-handed alpha
Helix 36	AD9	A	856	865	Right-handed alpha
Helix 37	AE1	A	866	872	Right-handed 310
Helix 38	AE2	A	875	902	Right-handed alpha
Helix 39	AE3	A	911	915	Right-handed 310
Helix 40	AE4	A	920	926	Right-handed 310
Helix 41	AE5	B	9	29	Right-handed alpha
Helix 42	AE6	B	31	95	Right-handed alpha
Helix 43	AE7	B	96	98	Right-handed 310
Helix 44	AE8	B	99	108	Right-handed alpha
Helix 45	AE9	B	119	124	Right-handed alpha
Helix 46	AF1	B	134	142	Right-handed alpha
Helix 47	AF2	B	168	172	Right-handed 310
Helix 48	AF3	B	176	180	Right-handed 310
Helix 49	AF4	C	3	19	Right-handed alpha
Helix 50	AF5	C	25	40	Right-handed alpha
Helix 51	AF6	C	46	62	Right-handed alpha
Helix 52	AF7	C	66	71	Right-handed alpha
Helix 53	AF8	D	9	29	Right-handed alpha
Helix 54	AF9	D	31	41	Right-handed alpha
Helix 55	AG1	D	42	80	Right-handed alpha
Helix 56	AG2	D	82	99	Right-handed alpha
Helix 57	AG3	D	100	113	Right-handed alpha
Helix 58	AG4	D	135	141	Right-handed alpha
Helix 59	AG5	D	168	172	Right-handed 310
Helix 60	AG6	F	26	36	Right-handed alpha
Helix 61	AG7	F	59	61	Right-handed 310
Helix 62	AG8	F	103	111	Right-handed alpha
Helix 63	AG9	F	116	124	Right-handed alpha
Helix 64	AH1	F	127	147	Right-handed alpha
Helix 65	AH2	F	265	271	Right-handed alpha
Helix 66	AH3	F	287	299	Right-handed alpha
Helix 67	AH4	F	310	325	Right-handed alpha
Helix 68	AH5	F	380	391	Right-handed alpha
Helix 69	AH6	F	418	422	Right-handed 310
Helix 70	AH7	F	423	432	Right-handed alpha
Helix 71	AH8	F	448	456	Right-handed alpha
Helix 72	AH9	F	489	503	Right-handed alpha
Helix 73	AI1	F	504	507	Right-handed 310
Helix 74	AI2	F	515	523	Right-handed alpha
Helix 75	AI3	F	561	566	Right-handed alpha
Helix 76	AI4	E	26	36	Right-handed alpha
Helix 77	AI5	E	103	112	Right-handed alpha
Helix 78	AI6	E	116	125	Right-handed alpha
Helix 79	AI7	E	127	147	Right-handed alpha
Helix 80	AI8	E	265	273	Right-handed alpha
Helix 81	AI9	E	287	289	Right-handed 310
Helix 82	AJ1	E	290	299	Right-handed alpha
Helix 83	AJ2	E	314	320	Right-handed alpha
Helix 84	AJ3	E	321	323	Right-handed 310
Helix 85	AJ4	E	380	390	Right-handed alpha
Helix 86	AJ5	E	418	422	Right-handed 310
Helix 87	AJ6	E	423	429	Right-handed alpha
Helix 88	AJ7	E	445	456	Right-handed alpha
Helix 89	AJ8	E	489	494	Right-handed alpha
Helix 90	AJ9	E	494	501	Right-handed alpha
Helix 91	AK1	E	515	524	Right-handed alpha
Helix 92	AK2	E	561	566	Right-handed alpha
Helix 93	AK3	G	95	110	Right-handed alpha

There are 37 sheets in PDB entry 8GWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	65	74	anti-parallel
Strand 4	A	112	115	anti-parallel
Strand 5	A	101	103	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	43	44	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	231	233	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	A	362	363	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	B	115	116	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	B	127	132	parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	154	160	anti-parallel
Strand 5	B	146	147	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	843	844	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	560	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	668	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	801	802	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	757	first strand
Strand 2	A	762	766	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	822	first strand
Strand 2	A	825	831	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	185	189	anti-parallel
Strand 3	D	152	160	anti-parallel
Strand 4	D	146	149	anti-parallel
Strand 5	D	142	143	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	11	12	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	14	16	anti-parallel
Strand 3	F	42	43	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	65	first strand
Strand 2	F	70	72	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	88	89	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	157	first strand
Strand 2	F	163	166	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	187	first strand
Strand 2	F	192	198	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	201	first strand
Strand 2	F	210	211	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	307	first strand
Strand 2	F	370	373	parallel
Strand 3	F	395	398	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	332	first strand
Strand 2	F	355	357	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	472	474	first strand
Strand 2	F	572	575	parallel
Strand 3	F	544	547	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	481	482	first strand
Strand 2	F	487	488	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	511	512	first strand
Strand 2	F	530	531	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	11	12	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	42	43	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	66	first strand
Strand 2	E	69	72	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	159	first strand
Strand 2	E	162	165	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	192	193	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	201	first strand
Strand 2	E	210	211	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	332	first strand
Strand 2	E	355	359	parallel
Strand 3	E	304	308	parallel
Strand 4	E	370	374	parallel
Strand 5	E	395	400	parallel
Strand 6	E	277	281	parallel
Strand 7	E	436	437	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	366	367	first strand
Strand 2	E	391	392	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	481	482	first strand
Strand 2	E	487	488	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	530	531	first strand
Strand 2	E	511	512	parallel
Strand 3	E	543	546	parallel
Strand 4	E	571	572	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	30	35	anti-parallel
Strand 3	G	38	41	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	53	57	anti-parallel
Strand 3	G	64	68	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	82	90	anti-parallel
Strand 3	G	73	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GWO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWO