Analysis of interatomic Contacts of Structural Units in PDB entry:
8GWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GWR entry

There are 2 chains in PDB entry 8GWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 138VAL 644
A
 LEU 136GLN 643
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8GWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
138 148Right-handed alpha
Helix 2
AA2
B
155 167Right-handed alpha
Helix 3
AA3
B
172 174Right-handed 310
Helix 4
AA4
B
175 184Right-handed alpha
Helix 5
AA5
B
196 204Right-handed alpha
Helix 6
AA6
B
207 216Right-handed alpha
Helix 7
AA7
B
223 240Right-handed alpha
Helix 8
AA8
B
250 255Right-handed alpha
Helix 9
AA9
B
285 287Right-handed 310
Helix 10
AB1
B
288 301Right-handed alpha
Helix 11
AB2
B
301 306Right-handed alpha
Helix 12
AB3
B
315 319Right-handed 310
Helix 13
AB4
B
334 343Right-handed alpha
Helix 14
AB5
B
350 366Right-handed alpha
Helix 15
AB6
B
374 385Right-handed alpha
Helix 16
AB7
B
385 398Right-handed alpha
Helix 17
AB8
B
406 419Right-handed alpha
Helix 18
AB9
B
423 436Right-handed alpha
Helix 19
AC1
B
449 464Right-handed alpha
Helix 20
AC2
B
465 467Right-handed 310
Helix 21
AC3
B
468 476Right-handed alpha
Helix 22
AC4
B
511 525Right-handed alpha
Helix 23
AC5
B
547 554Right-handed alpha
Helix 24
AC6
B
555 564Right-handed alpha
Helix 25
AC7
B
565 575Right-handed alpha
Helix 26
AC8
B
588 596Right-handed alpha
Helix 27
AC9
B
598 608Right-handed alpha
Helix 28
AD1
B
622 630Right-handed alpha
Helix 29
AD2
B
632 641Right-handed alpha
Helix 30
AD3
A
138 148Right-handed alpha
Helix 31
AD4
A
156 166Right-handed alpha
Helix 32
AD5
A
172 174Right-handed 310
Helix 33
AD6
A
175 185Right-handed alpha
Helix 34
AD7
A
197 205Right-handed alpha
Helix 35
AD8
A
207 216Right-handed alpha
Helix 36
AD9
A
223 240Right-handed alpha
Helix 37
AE1
A
250 255Right-handed alpha
Helix 38
AE2
A
285 287Right-handed 310
Helix 39
AE3
A
288 301Right-handed alpha
Helix 40
AE4
A
301 306Right-handed alpha
Helix 41
AE5
A
334 345Right-handed alpha
Helix 42
AE6
A
350 366Right-handed alpha
Helix 43
AE7
A
374 385Right-handed alpha
Helix 44
AE8
A
385 398Right-handed alpha
Helix 45
AE9
A
406 419Right-handed alpha
Helix 46
AF1
A
423 436Right-handed alpha
Helix 47
AF2
A
449 464Right-handed alpha
Helix 48
AF3
A
465 467Right-handed 310
Helix 49
AF4
A
468 476Right-handed alpha
Helix 50
AF5
A
511 525Right-handed alpha
Helix 51
AF6
A
553 564Right-handed alpha
Helix 52
AF7
A
565 575Right-handed alpha
Helix 53
AF8
A
588 596Right-handed alpha
Helix 54
AF9
A
598 608Right-handed alpha
Helix 55
AG1
A
622 630Right-handed alpha
Helix 56
AG2
A
632 641Right-handed alpha
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There are 7 sheets in PDB entry 8GWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
504 505anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 276first strand
Strand 2
B
262 267anti-parallel
Strand 3
B
496 501anti-parallel
Strand 4
B
487 492anti-parallel
Strand 5
B
480 482anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
420 422anti-parallel
Strand 3
B
371 373anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
194 196anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
504 505anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
262 267anti-parallel
Strand 3
A
496 501anti-parallel
Strand 4
A
487 492anti-parallel
Strand 5
A
480 482anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
420 422anti-parallel
Strand 3
A
372 373anti-parallel
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