Analysis of interatomic Contacts of Structural Units in PDB entry:
8GX4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GX4 entry

There is 1 chain in PDB entry 8GX4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13ALA 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8GX4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 30Right-handed alpha
Helix 2
AA2
A
38 56Right-handed alpha
Helix 3
AA3
A
57 81Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
105 119Right-handed alpha
Helix 7
AA7
A
136 141Right-handed 310
Helix 8
AA8
A
143 156Right-handed alpha
Helix 9
AA9
A
156 162Right-handed alpha
Helix 10
AB1
A
162 171Right-handed alpha
Helix 11
AB2
A
181 187Right-handed alpha
Helix 12
AB3
A
193 200Right-handed alpha
Helix 13
AB4
A
201 213Right-handed alpha
Helix 14
AB5
A
227 237Right-handed alpha
Helix 15
AB6
A
251 259Right-handed alpha
Helix 16
AB7
A
265 268Right-handed 310
Helix 17
AB8
A
274 283Right-handed alpha
Helix 18
AB9
A
316 320Right-handed 310
Helix 19
AC1
A
321 336Right-handed alpha
Helix 20
AC2
A
354 366Right-handed alpha
Helix 21
AC3
A
374 384Right-handed alpha
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There are 3 sheets in PDB entry 8GX4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
122 125anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
270 273parallel
Strand 3
A
243 246parallel
Strand 4
A
310 314parallel
Strand 5
A
341 349parallel
Strand 6
A
372 373parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
270 273parallel
Strand 3
A
243 246parallel
Strand 4
A
310 314parallel
Strand 5
A
341 349parallel
Strand 6
A
399 406anti-parallel
Strand 7
A
386 393anti-parallel
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