Analysis of interatomic Contacts of Structural Units in PDB entry:
8GX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GX9 entry

There are 10 chains in PDB entry 8GX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 333	GLY 526
E	THR 333	GLY 526
F	GLU 1	CYS 214
H	VAL 2	GLU 216
I	VAL 2	GLU 216
L	GLU 1	CYS 214
M	SER 2	PRO 211
O	VAL 2	GLU 212
N	SER 2	PRO 211
P	VAL 2	GLU 212

There are 49 helices in PDB entry 8GX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	343	Right-handed alpha
Helix 2	AA2	A	364	370	Right-handed alpha
Helix 3	AA3	A	384	390	Right-handed 310
Helix 4	AA4	A	406	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	502	505	Right-handed 310
Helix 7	AA7	E	337	343	Right-handed alpha
Helix 8	AA8	E	349	353	Right-handed 310
Helix 9	AA9	E	364	370	Right-handed alpha
Helix 10	AB1	E	386	390	Right-handed 310
Helix 11	AB2	E	405	410	Right-handed 310
Helix 12	AB3	E	416	422	Right-handed alpha
Helix 13	AB4	E	438	443	Right-handed alpha
Helix 14	AB5	E	502	505	Right-handed 310
Helix 15	AB6	F	80	84	Right-handed 310
Helix 16	AB7	F	121	128	Right-handed alpha
Helix 17	AB8	F	183	187	Right-handed alpha
Helix 18	AB9	H	28	32	Right-handed 310
Helix 19	AC1	H	86	90	Right-handed 310
Helix 20	AC2	H	100	102	Right-handed 310
Helix 21	AC3	H	160	162	Right-handed 310
Helix 22	AC4	H	191	194	Right-handed 310
Helix 23	AC5	H	205	208	Right-handed 310
Helix 24	AC6	I	28	32	Right-handed 310
Helix 25	AC7	I	100	102	Right-handed 310
Helix 26	AC8	I	160	162	Right-handed 310
Helix 27	AC9	I	189	194	Right-handed 310
Helix 28	AD1	L	80	84	Right-handed 310
Helix 29	AD2	L	123	128	Right-handed alpha
Helix 30	AD3	L	183	187	Right-handed alpha
Helix 31	AD4	M	27	31	Right-handed 310
Helix 32	AD5	M	49	53	Right-handed 310
Helix 33	AD6	M	79	83	Right-handed 310
Helix 34	AD7	M	124	130	Right-handed alpha
Helix 35	AD8	M	184	190	Right-handed alpha
Helix 36	AD9	O	28	32	Right-handed 310
Helix 37	AE1	O	83	87	Right-handed 310
Helix 38	AE2	O	156	158	Right-handed 310
Helix 39	AE3	O	185	189	Right-handed 310
Helix 40	AE4	O	201	204	Right-handed 310
Helix 41	AE5	N	27	31	Right-handed 310
Helix 42	AE6	N	49	53	Right-handed 310
Helix 43	AE7	N	124	130	Right-handed alpha
Helix 44	AE8	N	184	191	Right-handed alpha
Helix 45	AE9	P	28	32	Right-handed 310
Helix 46	AF1	P	73	75	Right-handed 310
Helix 47	AF2	P	83	87	Right-handed 310
Helix 48	AF3	P	156	158	Right-handed 310
Helix 49	AF4	P	187	189	Right-handed 310

There are 57 sheets in PDB entry 8GX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	395	403	anti-parallel
Strand 3	A	507	515	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	334	335	first strand
Strand 2	E	361	362	parallel
Strand 3	E	524	525	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	395	403	anti-parallel
Strand 3	E	507	515	anti-parallel
Strand 4	E	432	437	anti-parallel
Strand 5	E	376	379	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	492	494	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	488	489	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	29	anti-parallel
Strand 3	F	63	76	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	54	55	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	86	92	anti-parallel
Strand 4	F	96	98	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	150	first strand
Strand 2	F	191	197	anti-parallel
Strand 3	F	205	210	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	104	107	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	198	204	anti-parallel
Strand 3	H	209	215	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	70	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	104	107	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	128	first strand
Strand 2	I	140	149	anti-parallel
Strand 3	I	180	188	anti-parallel
Strand 4	I	167	169	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	128	first strand
Strand 2	I	140	149	anti-parallel
Strand 3	I	180	188	anti-parallel
Strand 4	I	173	174	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	158	first strand
Strand 2	I	198	204	anti-parallel
Strand 3	I	209	215	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	64	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	67	68	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	86	92	anti-parallel
Strand 4	L	36	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	86	92	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	117	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	191	197	anti-parallel
Strand 3	L	205	210	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	105	108	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	24	first strand
Strand 2	M	70	75	anti-parallel
Strand 3	M	62	63	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	24	first strand
Strand 2	M	70	75	anti-parallel
Strand 3	M	66	67	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	48	first strand
Strand 2	M	33	38	anti-parallel
Strand 3	M	85	91	anti-parallel
Strand 4	M	98	100	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	121	first strand
Strand 2	M	133	142	anti-parallel
Strand 3	M	175	183	anti-parallel
Strand 4	M	162	164	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	121	first strand
Strand 2	M	133	142	anti-parallel
Strand 3	M	175	183	anti-parallel
Strand 4	M	168	169	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	156	158	first strand
Strand 2	M	148	153	anti-parallel
Strand 3	M	194	200	anti-parallel
Strand 4	M	203	209	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	6	first strand
Strand 2	O	18	25	anti-parallel
Strand 3	O	77	82	anti-parallel
Strand 4	O	67	72	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	107	111	parallel
Strand 3	O	88	95	anti-parallel
Strand 4	O	33	39	anti-parallel
Strand 5	O	45	51	anti-parallel
Strand 6	O	57	59	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	107	111	parallel
Strand 3	O	88	95	anti-parallel
Strand 4	O	100	103	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	120	124	first strand
Strand 2	O	138	145	anti-parallel
Strand 3	O	176	182	anti-parallel
Strand 4	O	163	165	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	120	124	first strand
Strand 2	O	138	145	anti-parallel
Strand 3	O	176	182	anti-parallel
Strand 4	O	169	170	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	151	154	first strand
Strand 2	O	195	200	anti-parallel
Strand 3	O	205	210	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	105	108	parallel
Strand 3	N	84	91	anti-parallel
Strand 4	N	32	38	anti-parallel
Strand 5	N	45	48	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	105	108	parallel
Strand 3	N	84	91	anti-parallel
Strand 4	N	98	100	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	63	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	66	67	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	121	first strand
Strand 2	N	133	142	anti-parallel
Strand 3	N	175	183	anti-parallel
Strand 4	N	162	164	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	121	first strand
Strand 2	N	133	142	anti-parallel
Strand 3	N	175	183	anti-parallel
Strand 4	N	168	169	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	158	first strand
Strand 2	N	148	153	anti-parallel
Strand 3	N	194	200	anti-parallel
Strand 4	N	203	209	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	18	25	anti-parallel
Strand 3	P	77	82	anti-parallel
Strand 4	P	67	72	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	107	111	parallel
Strand 3	P	88	94	anti-parallel
Strand 4	P	34	39	anti-parallel
Strand 5	P	46	51	anti-parallel
Strand 6	P	57	59	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	107	111	parallel
Strand 3	P	88	94	anti-parallel
Strand 4	P	102	103	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	120	124	first strand
Strand 2	P	135	145	anti-parallel
Strand 3	P	176	185	anti-parallel
Strand 4	P	163	165	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	131	132	first strand
Strand 2	P	135	145	anti-parallel
Strand 3	P	176	185	anti-parallel
Strand 4	P	169	170	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	151	154	first strand
Strand 2	P	195	200	anti-parallel
Strand 3	P	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GX9