Analysis of interatomic Contacts of Structural Units in PDB entry:
8GXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GXD entry

There is 1 chain in PDB entry 8GXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8GXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
59 81Right-handed alpha
Helix 3
AA3
A
101 114Right-handed alpha
Helix 4
AA4
A
128 137Right-handed alpha
Helix 5
AA5
A
146 153Right-handed alpha
Helix 6
AA6
A
155 176Right-handed alpha
Helix 7
AA7
A
191 204Right-handed alpha
Helix 8
AA8
A
214 226Right-handed alpha
Helix 9
AA9
A
256 260Right-handed 310
Helix 10
AB1
A
276 285Right-handed alpha
Helix 11
AB2
A
291 296Right-handed alpha
Helix 12
AB3
A
297 307Right-handed alpha
Helix 13
AB4
A
311 320Right-handed alpha
Helix 14
AB5
A
321 336Right-handed alpha
Helix 15
AB6
A
339 359Right-handed alpha
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There are 3 sheets in PDB entry 8GXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
34 42anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
52 55parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
34 42anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
48 49parallel
Strand 5
A
119 120parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
207 211parallel
Strand 3
A
184 188parallel
Strand 4
A
242 245parallel
Strand 5
A
264 265parallel
Strand 6
A
288 289parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il