Analysis of interatomic Contacts of Structural Units in PDB entry:
8GXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GXE entry

There are 2 chains in PDB entry 8GXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 878SER 1171
B
 LYS 20ASN 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8GXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
879 893Right-handed alpha
Helix 2
AA2
A
894 902Right-handed alpha
Helix 3
AA3
A
918 923Right-handed alpha
Helix 4
AA4
A
977 988Right-handed alpha
Helix 5
AA5
A
1073 1093Right-handed alpha
Helix 6
AA6
A
1112 1130Right-handed alpha
Helix 7
AA7
A
1135 1145Right-handed alpha
Helix 8
AA8
A
1153 1169Right-handed alpha
Helix 9
AA9
B
44 56Right-handed alpha
Helix 10
AB1
B
60 62Right-handed 310
Helix 11
AB2
B
83 92Right-handed alpha
Helix 12
AB3
B
113 130Right-handed alpha
Helix 13
AB4
B
136 152Right-handed alpha
Helix 14
AB5
B
177 195Right-handed alpha
Helix 15
AB6
B
199 212Right-handed alpha
Helix 16
AB7
B
286 306Right-handed alpha
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There are 5 sheets in PDB entry 8GXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 939first strand
Strand 2
A
950 960anti-parallel
Strand 3
A
963 971anti-parallel
Strand 4
A
1104 1108parallel
Strand 5
A
992 995parallel
Strand 6
A
1054 1062parallel
Strand 7
A
1039 1048anti-parallel
Strand 8
A
1026 1035anti-parallel
Strand 9
A
1020 1023anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 939first strand
Strand 2
A
950 960anti-parallel
Strand 3
A
963 971anti-parallel
Strand 4
A
1104 1108parallel
Strand 5
A
992 995parallel
Strand 6
A
1054 1062parallel
Strand 7
A
1039 1048anti-parallel
Strand 8
A
1026 1035anti-parallel
Strand 9
B
34 40anti-parallel
Strand 10
B
22 28anti-parallel
Strand 11
B
96 101parallel
Strand 12
B
64 69anti-parallel
Strand 13
B
75 77anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1000 1001first strand
Strand 2
A
1004 1005anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
231 236anti-parallel
Strand 3
B
241 245anti-parallel
Strand 4
B
252 254anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 265first strand
Strand 2
B
268 272anti-parallel
Strand 3
B
280 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il