Analysis of interatomic Contacts of Structural Units in PDB entry:
8GXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GXF entry

There are 4 chains in PDB entry 8GXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 2	SER 188
A	PHE 2	SER 188
C	PHE 2	SER 188
D	PHE 2	SER 188

There are 28 helices in PDB entry 8GXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	20	22	Right-handed 310
Helix 2	AA2	B	23	34	Right-handed alpha
Helix 3	AA3	B	47	60	Right-handed alpha
Helix 4	AA4	B	98	101	Right-handed 310
Helix 5	AA5	B	104	120	Right-handed alpha
Helix 6	AA6	B	134	144	Right-handed alpha
Helix 7	AA7	B	175	187	Right-handed alpha
Helix 8	AA8	A	23	34	Right-handed alpha
Helix 9	AA9	A	46	59	Right-handed alpha
Helix 10	AB1	A	98	101	Right-handed 310
Helix 11	AB2	A	105	119	Right-handed alpha
Helix 12	AB3	A	134	144	Right-handed alpha
Helix 13	AB4	A	175	186	Right-handed alpha
Helix 14	AB5	C	20	22	Right-handed 310
Helix 15	AB6	C	23	34	Right-handed alpha
Helix 16	AB7	C	35	39	Right-handed 310
Helix 17	AB8	C	46	59	Right-handed alpha
Helix 18	AB9	C	98	101	Right-handed 310
Helix 19	AC1	C	104	119	Right-handed alpha
Helix 20	AC2	C	134	143	Right-handed alpha
Helix 21	AC3	C	176	184	Right-handed alpha
Helix 22	AC4	D	22	32	Right-handed alpha
Helix 23	AC5	D	34	39	Right-handed alpha
Helix 24	AC6	D	46	59	Right-handed alpha
Helix 25	AC7	D	98	101	Right-handed 310
Helix 26	AC8	D	104	119	Right-handed alpha
Helix 27	AC9	D	136	145	Right-handed alpha
Helix 28	AD1	D	175	188	Right-handed alpha

There are 6 sheets in PDB entry 8GXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	14	18	anti-parallel
Strand 3	B	62	68	anti-parallel
Strand 4	B	73	83	anti-parallel
Strand 5	B	88	96	anti-parallel
Strand 6	B	125	131	parallel
Strand 7	B	163	170	anti-parallel
Strand 8	B	147	157	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	14	18	anti-parallel
Strand 3	A	63	69	anti-parallel
Strand 4	A	72	83	anti-parallel
Strand 5	A	88	96	anti-parallel
Strand 6	A	125	131	parallel
Strand 7	A	163	172	anti-parallel
Strand 8	A	147	157	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	14	18	anti-parallel
Strand 3	C	62	69	anti-parallel
Strand 4	C	72	80	anti-parallel
Strand 5	C	95	96	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	14	18	anti-parallel
Strand 3	C	62	69	anti-parallel
Strand 4	C	72	80	anti-parallel
Strand 5	C	88	91	anti-parallel
Strand 6	C	125	131	parallel
Strand 7	C	166	172	anti-parallel
Strand 8	C	147	151	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	163	164	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	10	first strand
Strand 2	D	14	18	anti-parallel
Strand 3	D	62	69	anti-parallel
Strand 4	D	72	83	anti-parallel
Strand 5	D	88	96	anti-parallel
Strand 6	D	125	131	parallel
Strand 7	D	163	172	anti-parallel
Strand 8	D	147	157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GXF