Analysis of interatomic Contacts of Structural Units in PDB entry:
8GXK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GXK entry

There are 4 chains in PDB entry 8GXK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5GLY 189
B
 PHE 2GLY 189
C
 ARG 3GLY 189
D
 PHE 2GLY 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8GXK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 22Right-handed 310
Helix 2
AA2
A
23 34Right-handed alpha
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
46 59Right-handed alpha
Helix 5
AA5
A
98 101Right-handed 310
Helix 6
AA6
A
104 120Right-handed alpha
Helix 7
AA7
A
134 144Right-handed alpha
Helix 8
AA8
A
175 188Right-handed alpha
Helix 9
AA9
B
20 22Right-handed 310
Helix 10
AB1
B
23 34Right-handed alpha
Helix 11
AB2
B
35 39Right-handed 310
Helix 12
AB3
B
46 59Right-handed alpha
Helix 13
AB4
B
98 101Right-handed 310
Helix 14
AB5
B
104 120Right-handed alpha
Helix 15
AB6
B
134 144Right-handed alpha
Helix 16
AB7
B
175 186Right-handed alpha
Helix 17
AB8
C
20 22Right-handed 310
Helix 18
AB9
C
23 34Right-handed alpha
Helix 19
AC1
C
35 39Right-handed 310
Helix 20
AC2
C
46 59Right-handed alpha
Helix 21
AC3
C
98 101Right-handed 310
Helix 22
AC4
C
104 120Right-handed alpha
Helix 23
AC5
C
134 145Right-handed alpha
Helix 24
AC6
C
175 187Right-handed alpha
Helix 25
AC7
D
20 22Right-handed 310
Helix 26
AC8
D
23 34Right-handed alpha
Helix 27
AC9
D
46 59Right-handed alpha
Helix 28
AD1
D
98 101Right-handed 310
Helix 29
AD2
D
104 120Right-handed alpha
Helix 30
AD3
D
134 144Right-handed alpha
Helix 31
AD4
D
175 186Right-handed alpha
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There are 4 sheets in PDB entry 8GXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 18anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
72 83anti-parallel
Strand 5
A
88 96anti-parallel
Strand 6
A
125 131parallel
Strand 7
A
163 172anti-parallel
Strand 8
A
147 157anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
14 18anti-parallel
Strand 3
B
62 69anti-parallel
Strand 4
B
73 83anti-parallel
Strand 5
B
88 96anti-parallel
Strand 6
B
125 131parallel
Strand 7
B
163 172anti-parallel
Strand 8
B
147 157anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
14 18anti-parallel
Strand 3
C
62 69anti-parallel
Strand 4
C
72 83anti-parallel
Strand 5
C
88 96anti-parallel
Strand 6
C
125 131parallel
Strand 7
C
163 172anti-parallel
Strand 8
C
147 157anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
14 18anti-parallel
Strand 3
D
62 69anti-parallel
Strand 4
D
72 83anti-parallel
Strand 5
D
88 96anti-parallel
Strand 6
D
125 131parallel
Strand 7
D
163 172anti-parallel
Strand 8
D
147 157anti-parallel
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