Analysis of interatomic Contacts of Structural Units in PDB entry:
8GXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GXR entry

There are 4 chains in PDB entry 8GXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 638ALA 916
B
 ASP 638ALA 918
C
 ASP 638ALA 918
D
 ASP 638ALA 918
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8GXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
667 683Right-handed alpha
Helix 2
AA2
A
757 761Right-handed 310
Helix 3
AA3
A
777 789Right-handed alpha
Helix 4
AA4
A
793 805Right-handed 310
Helix 5
AA5
A
807 835Right-handed alpha
Helix 6
AA6
A
840 849Right-handed alpha
Helix 7
AA7
A
852 871Right-handed alpha
Helix 8
AA8
A
878 882Right-handed 310
Helix 9
AA9
A
890 915Right-handed alpha
Helix 10
AB1
B
667 683Right-handed alpha
Helix 11
AB2
B
757 761Right-handed 310
Helix 12
AB3
B
777 789Right-handed alpha
Helix 13
AB4
B
793 805Right-handed 310
Helix 14
AB5
B
807 835Right-handed alpha
Helix 15
AB6
B
840 849Right-handed alpha
Helix 16
AB7
B
852 871Right-handed alpha
Helix 17
AB8
B
878 882Right-handed 310
Helix 18
AB9
B
890 915Right-handed alpha
Helix 19
AC1
C
667 683Right-handed alpha
Helix 20
AC2
C
757 761Right-handed 310
Helix 21
AC3
C
777 789Right-handed alpha
Helix 22
AC4
C
793 797Right-handed 310
Helix 23
AC5
C
799 805Right-handed 310
Helix 24
AC6
C
807 835Right-handed alpha
Helix 25
AC7
C
840 849Right-handed alpha
Helix 26
AC8
C
852 871Right-handed alpha
Helix 27
AC9
C
890 916Right-handed alpha
Helix 28
AD1
D
667 683Right-handed alpha
Helix 29
AD2
D
757 761Right-handed 310
Helix 30
AD3
D
777 789Right-handed alpha
Helix 31
AD4
D
793 797Right-handed 310
Helix 32
AD5
D
798 803Right-handed alpha
Helix 33
AD6
D
807 835Right-handed alpha
Helix 34
AD7
D
840 849Right-handed alpha
Helix 35
AD8
D
852 871Right-handed alpha
Helix 36
AD9
D
873 877Right-handed 310
Helix 37
AE1
D
878 882Right-handed 310
Helix 38
AE2
D
890 918Right-handed alpha
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There are 4 sheets in PDB entry 8GXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
644 647first strand
Strand 2
A
687 692parallel
Strand 3
A
698 704anti-parallel
Strand 4
A
715 721anti-parallel
Strand 5
A
732 735anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
644 647first strand
Strand 2
B
687 692parallel
Strand 3
B
698 704anti-parallel
Strand 4
B
715 721anti-parallel
Strand 5
B
732 735anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
644 647first strand
Strand 2
C
687 692parallel
Strand 3
C
698 704anti-parallel
Strand 4
C
715 721anti-parallel
Strand 5
C
732 735anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
644 647first strand
Strand 2
D
687 692parallel
Strand 3
D
698 704anti-parallel
Strand 4
D
715 721anti-parallel
Strand 5
D
732 735anti-parallel
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