Analysis of interatomic Contacts of Structural Units in PDB entry:
8GXV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GXV entry

There is 1 chain in PDB entry 8GXV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4PRO 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8GXV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
44 55Right-handed alpha
Helix 4
AA4
A
61 81Right-handed alpha
Helix 5
AA5
A
102 113Right-handed alpha
Helix 6
AA6
A
125 141Right-handed alpha
Helix 7
AA7
A
177 181Right-handed 310
Helix 8
AA8
A
237 244Right-handed alpha
Helix 9
AA9
A
246 256Right-handed alpha
Helix 10
AB1
A
277 284Right-handed alpha
Helix 11
AB2
A
287 291Right-handed 310
Helix 12
AB3
A
297 301Right-handed 310
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There are 3 sheets in PDB entry 8GXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
366 372anti-parallel
Strand 3
A
354 360anti-parallel
Strand 4
A
225 232anti-parallel
Strand 5
A
213 219anti-parallel
Strand 6
A
192 209anti-parallel
Strand 7
A
182 189anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
366 372anti-parallel
Strand 3
A
354 360anti-parallel
Strand 4
A
225 232anti-parallel
Strand 5
A
213 219anti-parallel
Strand 6
A
192 209anti-parallel
Strand 7
A
258 267anti-parallel
Strand 8
A
347 349parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 95first strand
Strand 2
A
160 170anti-parallel
Strand 3
A
311 320parallel
Strand 4
A
269 276anti-parallel
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