Analysis of interatomic Contacts of Structural Units in PDB entry:
8GY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GY2 entry

There are 3 chains in PDB entry 8GY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 35	PRO 757
B	ALA 39	HIS 471
C	GLU 26	LEU 133

There are 48 helices in PDB entry 8GY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	45	Right-handed alpha
Helix 2	AA2	A	46	48	Right-handed 310
Helix 3	AA3	A	76	80	Right-handed 310
Helix 4	AA4	A	110	112	Right-handed 310
Helix 5	AA5	A	133	140	Right-handed 310
Helix 6	AA6	A	251	258	Right-handed alpha
Helix 7	AA7	A	259	263	Right-handed 310
Helix 8	AA8	A	268	273	Right-handed alpha
Helix 9	AA9	A	302	308	Right-handed alpha
Helix 10	AB1	A	409	411	Right-handed 310
Helix 11	AB2	A	412	417	Right-handed alpha
Helix 12	AB3	A	485	498	Right-handed alpha
Helix 13	AB4	A	587	594	Right-handed alpha
Helix 14	AB5	A	595	597	Right-handed 310
Helix 15	AB6	A	641	653	Right-handed alpha
Helix 16	AB7	A	653	658	Right-handed alpha
Helix 17	AB8	A	659	662	Right-handed 310
Helix 18	AB9	A	669	673	Right-handed 310
Helix 19	AC1	A	674	677	Right-handed 310
Helix 20	AC2	A	678	687	Right-handed alpha
Helix 21	AC3	A	691	695	Right-handed 310
Helix 22	AC4	A	704	731	Right-handed alpha
Helix 23	AC5	A	738	743	Right-handed alpha
Helix 24	AC6	B	40	54	Right-handed alpha
Helix 25	AC7	B	55	60	Right-handed alpha
Helix 26	AC8	B	98	109	Right-handed alpha
Helix 27	AC9	B	122	127	Right-handed alpha
Helix 28	AD1	B	130	144	Right-handed alpha
Helix 29	AD2	B	158	162	Right-handed 310
Helix 30	AD3	B	164	175	Right-handed alpha
Helix 31	AD4	B	188	200	Right-handed alpha
Helix 32	AD5	B	204	209	Right-handed alpha
Helix 33	AD6	B	255	266	Right-handed alpha
Helix 34	AD7	B	274	284	Right-handed alpha
Helix 35	AD8	B	285	288	Right-handed 310
Helix 36	AD9	B	289	302	Right-handed alpha
Helix 37	AE1	B	317	326	Right-handed alpha
Helix 38	AE2	B	330	340	Right-handed alpha
Helix 39	AE3	B	340	345	Right-handed alpha
Helix 40	AE4	B	361	366	Right-handed alpha
Helix 41	AE5	B	369	378	Right-handed alpha
Helix 42	AE6	B	402	415	Right-handed alpha
Helix 43	AE7	B	426	436	Right-handed alpha
Helix 44	AE8	B	443	447	Right-handed 310
Helix 45	AE9	C	50	60	Right-handed alpha
Helix 46	AF1	C	69	80	Right-handed alpha
Helix 47	AF2	C	89	97	Right-handed alpha
Helix 48	AF3	C	121	130	Right-handed alpha

There are 15 sheets in PDB entry 8GY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	527	530	parallel
Strand 3	A	534	538	anti-parallel
Strand 4	A	543	548	anti-parallel
Strand 5	A	554	559	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	87	first strand
Strand 2	A	608	613	anti-parallel
Strand 3	A	576	583	anti-parallel
Strand 4	A	569	573	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	124	128	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	155	159	anti-parallel
Strand 3	A	164	169	anti-parallel
Strand 4	A	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	206	209	anti-parallel
Strand 3	A	221	226	anti-parallel
Strand 4	A	232	237	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	298	299	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	285	first strand
Strand 2	A	290	294	anti-parallel
Strand 3	A	318	322	anti-parallel
Strand 4	A	329	334	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	356	first strand
Strand 2	A	359	366	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	383	388	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	405	407	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	453	455	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	438	first strand
Strand 2	A	443	450	anti-parallel
Strand 3	A	500	507	anti-parallel
Strand 4	A	512	519	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	80	82	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	271	272	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	382	first strand
Strand 2	B	392	394	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	106	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GY2